PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032697.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 279aa    MW: 29866.3 Da    PI: 10.0271
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032697.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.6e-3869129262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++
  CCG032697.1  69 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKTK 129
                  67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3553125IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3272127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.21773127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVFSSVPVYL DPPSWQQQQQ PSQQLGACDE SSQLPPLPPP PHVGGSGTAG SIRPGSMSDR  60
ARLAKIPQPE AALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRSVPVGG  120
GCRRNKKTKS QSSSKSPVSS ERQMGSTSST SSSALPSQIV GHFPQQQTQF PFVTSLHNLN  180
QFGVGNIGLN FGGIQGQMGS TSGASAEAPT GFPGESSQLR SMASSSRVSQ LAPVKSEGNQ  240
GLNLSKPFLG IPENNQYYWG GNTWTDLSGL NSSSTSHFL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042739.11e-165PREDICTED: dof zinc finger protein DOF3.6
SwissprotQ9M2U16e-55DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLB9HPI61e-152B9HPI6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03490.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.19e-45Dof family protein