PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 27671 Da PI: 7.288 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.2e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+++ + r+ps+e++e+++++l +++ ++V++WFqN++a++++ CCG032694.1 18 SRWNPTKEQISMLESFYSQgIRTPSTEMIEQITSRLkaygHIEGKNVFYWFQNHKARQRQ 77 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 109.9 | 1.4e-35 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQi +Le+ y++G+rtP++e i++it++L++yG+ie+kNVfyWFQN+kaR+rqkq CCG032694.1 17 NSRWNPTKEQISMLESFYSQGIRTPSTEMIEQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.835 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-6 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-13 | 16 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-9 | 18 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-18 | 18 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.24E-7 | 19 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDNDDMDVAG SGGAPGNSRW NPTKEQISML ESFYSQGIRT PSTEMIEQIT SRLKAYGHIE 60 GKNVFYWFQN HKARQRQKQK QESMAYINNY LHKVHQPVFA HPCANVVCCP YFPQQSEVMG 120 FCQQHPKMLL PSNFKMRPRS EARTYAFNGY EPAAPYGYHD RITMNKGERT LVTINHKSSS 180 DQATLPLFPL HPTGTLEGAT TICPLGSTPP ENSINTPSSS EITTGIEEHS SDCKPFFDFF 240 YGKDS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982702 | 0.0 | KF982702.1 Populus tomentosa WOX2b (WOX2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042737.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
TrEMBL | B9HPI9 | 1e-177 | B9HPI9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03460.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 6e-51 | WUSCHEL related homeobox 2 |