PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032421.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 170aa    MW: 19572.9 Da    PI: 8.2478
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032421.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-172072456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + ++t++q++ Le+ F  ++++  e + +LA++lg++ rq+ +W+qN+Ra++k
  CCG032421.1 20 KKRLTHDQVRLLERTFTTTKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 72
                 5679************************************************9 PP
2HD-ZIP_I/II109.91.8e-3519110293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+++++   ++++rLe+ev +L+eel++
  CCG032421.1  19 NKKRLTHDQVRLLERTFTTTKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLRAKLEDALADRRRLEREVVQLQEELRR 110
                  79**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3051474IPR001356Homeobox domain
SMARTSM003894.4E-141678IPR001356Homeobox domain
SuperFamilySSF466897.27E-171984IPR009057Homeodomain-like
CDDcd000865.51E-132075No hitNo description
Gene3DG3DSA:1.10.10.601.8E-182081IPR009057Homeodomain-like
PfamPF000466.4E-152072IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDFFHSQNQH SPKHQNSSNK KRLTHDQVRL LERTFTTTKK LEPELKVQLA NQLGVPPRQI  60
AIWYQNKRAR WKTQSLELDY NTLRAKLEDA LADRRRLERE VVQLQEELRR AQQMVFHLNQ  120
GPGQPPVNVS SNSSCDEGGS SSLHEEANGE FLQIEELYAC LYGSGGSTWG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375850.0AC237585.1 Populus trichocarpa clone POP011-E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029534.11e-125PREDICTED: homeobox-leucine zipper protein ATHB-52-like
SwissprotQ9FN292e-43ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A3N7HFD21e-120A0A3N7HFD2_POPTR; Uncharacterized protein
STRINGPOPTR_0011s11510.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-34homeobox protein 52