PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032251.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 33666.3 Da PI: 4.4665

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032251.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.5e-19	76	130	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+ q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ CCG032251.1 76 KKRRLTAAQVQFLEKSFEAENKLEPERKMQLAKELGLQPRQVAIWFQNRRARFKN 130 56689***********************************************995 PP
2	HD-ZIP_I/II	121.4	4.6e-39	75	166	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++ qv++LE+sFe+e+kLeperK++la+eLglqprqva+WFqnrRAR+k+k+lE++y++L+ ++d+lk++ ++L e ++L++el CCG032251.1 75 EKKRRLTAAQVQFLEKSFEAENKLEPERKMQLAKELGLQPRQVAIWFQNRRARFKNKKLEREYDSLRICFDKLKADYDKLLLEEQNLKNELL 166 69**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-20	62	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.831	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	74	135	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	76	129	IPR001356	Homeobox domain
CDD	cd00086	1.13E-16	76	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-20	77	138	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-6	102	111	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-6	111	127	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.2E-11	131	172	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MLYPRAKLES SNELTNSSPP LSHYSSDSSE RLMGAKSMVN FRNDGGDTVD MSFFQPHVKE 60 ESSDEDDDAH LKPSEKKRRL TAAQVQFLEK SFEAENKLEP ERKMQLAKEL GLQPRQVAIW 120 FQNRRARFKN KKLEREYDSL RICFDKLKAD YDKLLLEEQN LKNELLSLKE KLLSREESME 180 SSEPFDVIHS PDAELEPLPD TVSENVSAIV PTVTPKQEES SAKNDAFNSD QPDCYRVFES 240 DQPDSSQVEE DNLTRSFLPP PYFPNLYREP PASSCNFEFS AEDQPFWSWI Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034210.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBL	A0A3N7FGN8	1e-157	A0A3N7FGN8_POPTR; Uncharacterized protein
STRING	POPTR_0008s19900.1	1e-157	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	6e-34	homeobox 3