PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032105.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 351aa MW: 38455.8 Da PI: 8.5533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032105.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	55	114	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ CCG032105.1 55 QQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 114 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.7E-34	56	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-28	57	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MLGNCEKMVV ISSTTNAWPQ NQIDEKSLMA STSKLMERPS QEVLSQPQQQ QQQLQQALKC 60 PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRVKRPASAA 120 EGASNSVPSA NPNPQTPIDH ISSTSNHTNP LFYGLSGSNP SEMNLPFPGR FNPRMDSAVS 180 GYHDPQPQLN ALALGFSSGI MSTNDANGFN PTKQIQDVVT SNSLLSSYSN LFGSSTTSTN 240 TTSPIIASLL ASSFNQQKFT NGGIKESTRA PNYFQSLTVP FEELQMNGNS QSGIDMKGVK 300 TEHDQNRLDW NVPCQNQIEQ VGLSDPSMYW NTTTSVGSWH DPATMGSSVL L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MLGNCEKMVV ISSTTNAWPQ NQIDEKSLMA STSKLMERPS QEVLSQPQQQ QQQLQQALKC  60
PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN KRVKRPASAA  120
EGASNSVPSA NPNPQTPIDH ISSTSNHTNP LFYGLSGSNP SEMNLPFPGR FNPRMDSAVS  180
GYHDPQPQLN ALALGFSSGI MSTNDANGFN PTKQIQDVVT SNSLLSSYSN LFGSSTTSTN  240
TTSPIIASLL ASSFNQQKFT NGGIKESTRA PNYFQSLTVP FEELQMNGNS QSGIDMKGVK  300
TEHDQNRLDW NVPCQNQIEQ VGLSDPSMYW NTTTSVGSWH DPATMGSSVL L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043409.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A172CDG8	0.0	A0A172CDG8_POPTO; F-box family protein 1
STRING	POPTR_0011s05450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-42	Dof family protein