PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032103.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 320aa MW: 35124.6 Da PI: 9.3589

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032103.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.5e-38	29	89	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynny+lsqPryfCk+CrryWt GG+lrnvPvGgg+rk k+++ CCG032103.1 29 PQQPQKCPRCESLNTKFCYYNNYNLSQPRYFCKTCRRYWTLGGTLRNVPVGGGCRKGKRAK 89 78999***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.2E-32	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	34	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MQGGSEDVKP NQERRLKSTQ GDDQQQHQPQ QPQKCPRCES LNTKFCYYNN YNLSQPRYFC 60 KTCRRYWTLG GTLRNVPVGG GCRKGKRAKT SSSSSSGENS RLQQQLPQQP HHFATPQNIL 120 ATNNSGNLSS PALRNKESGN LVSAPPGMST MGSYFPGGGF LTSLEAIQSL NNNQPPIQSF 180 PLQTLNQPVN LGGVLGETSN LGLLHGFNAV PAFGSQNQQQ SQFYHVGYRD ARSIEHSFYP 240 HNQESLIQSS RPATSSHQQQ NWHHGFMSNS SHTVSDTALW STSTSTTIGH TNSNIIPTAG 300 SSPLNPDQWK HDLPGYGPPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043407.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	U5G111	0.0	U5G111_POPTR; Uncharacterized protein
STRING	POPTR_0011s05410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-32	OBF binding protein 4