PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 207aa MW: 23893.2 Da PI: 9.6323 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.4 | 8.1e-32 | 32 | 130 | 2 | 102 |
HHHHHHHHHC.......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeile.......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++le ++ k++ sw+++gn fvv+ + ef++ Lp+yFkhsnf+SF+RQLn+YgFkk+++++ weFkh+ F+kg++ CCG032077.1 32 FLSKTYDLLEeggahdsAPHGKRIASWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTYGFKKTSSKQ---------WEFKHEMFQKGRR 119 9*********7777766669999************************************************9988.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 ++l +i rkk CCG032077.1 120 HMLVEIIRKKC 130 *******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.9E-34 | 23 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.9E-40 | 28 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.48E-26 | 29 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.7E-28 | 32 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAATFSQLEQ DTTSKSSSSN TRSPRTKCPA PFLSKTYDLL EEGGAHDSAP HGKRIASWNA 60 EGNGFVVWSP AEFSELTLPR YFKHSNFSSF IRQLNTYGFK KTSSKQWEFK HEMFQKGRRH 120 MLVEIIRKKC EPSMFPTYLK ASSNQENATL DMEETTCSML MAENKNLRRE KLELQIQIAQ 180 FKALETKLLD CLTQYMGNHQ NKTRRLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-16 | 30 | 128 | 2 | 104 | Putative transcription factor |
5d5x_B | 2e-16 | 30 | 128 | 2 | 104 | Putative transcription factor |
5d5x_E | 2e-16 | 30 | 128 | 2 | 104 | Putative transcription factor |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043366.1 | 1e-156 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | U5FYD0 | 1e-130 | U5FYD0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05130.1 | 1e-131 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-36 | heat shock transcription factor B2A |