PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032061.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 724aa    MW: 79764.1 Da    PI: 5.687
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032061.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2055110156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  CCG032061.1  55 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 110
                  688999***********************************************999 PP
2START219.88.9e-692444641206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++el+++a+ +ep+W+ s       +n+de++++f+ + +     ++ ea+r+++vv+m++ +lve l+d++ qW++ +     +a tlev+
  CCG032061.1 244 ELAVAAMEELIRMAQMDEPLWMNSLdgidAVLNEDEYIRIFPHGIGpkptgFKCEASRETAVVIMNHINLVEYLMDVN-QWSTLFSgivsRALTLEVL 340
                  57899********************999999**********99999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q+++plvp R++++vRy++q+ +g+w++vdvS+ds ++ p     +R++++pSg+li++++ng+skvtwvehv++++r 
  CCG032061.1 341 STGvagnynGALQVMTAEFQLPTPLVPtRESYYVRYCKQHADGTWAVVDVSLDSIRPGPA----ARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRG 434
                  ***********************************************************5....********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+gak+wvatl+rqce+
  CCG032061.1 435 VHNLYKHLVSSGHAFGAKRWVATLNRQCER 464
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2233110IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1943112IPR009057Homeodomain-like
PROSITE profilePS5007116.95752112IPR001356Homeobox domain
SMARTSM003894.8E-2053116IPR001356Homeobox domain
PfamPF000464.0E-1855110IPR001356Homeobox domain
CDDcd000862.45E-1955113No hitNo description
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084844.255235467IPR002913START domain
SuperFamilySSF559616.25E-36235466No hitNo description
CDDcd088755.49E-129239463No hitNo description
SMARTSM002347.2E-65244464IPR002913START domain
PfamPF018522.2E-58245464IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-6340462IPR023393START-like domain
SuperFamilySSF559611.44E-23483716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MMEGHEFHHL DMTHNTSEGD MTRIRDEEFD STNTKSGSEN QEGASGDDQD PRPKKKRYHR  60
HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQHERHENTQ  120
LRNENEKLRA DNMRYREALS NASCPNCGGP TAIGEMSFDE HHLRLENTRL REEIDRISAI  180
AARYVGKPVV NYPVLSPPMP PRPVDLGVGN FGGQPGLGGD IYEAGDLLRS ISAPTEADKP  240
MIIELAVAAM EELIRMAQMD EPLWMNSLDG IDAVLNEDEY IRIFPHGIGP KPTGFKCEAS  300
RETAVVIMNH INLVEYLMDV NQWSTLFSGI VSRALTLEVL STGVAGNYNG ALQVMTAEFQ  360
LPTPLVPTRE SYYVRYCKQH ADGTWAVVDV SLDSIRPGPA ARCRRRPSGC LIQEMPNGYS  420
KVTWVEHVEV DDRGVHNLYK HLVSSGHAFG AKRWVATLNR QCERLASAMA TNIPAGDAGV  480
ITNQEGRKSM MKLAERMVIS FCAGVSASTA HTWTTLSGTG ADDVRVMTRK SVDDPGRPPG  540
IVLSAATSFW LPVPPKRVFD FLRDENTRNE WDILSNGGVV QEMAHIANGR DTGNSVSLIR  600
VNSANSSQSN MLILQESCTD QTASFVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAIFPD  660
GTAAHGVGME ESGSTGGSLL TVAFQILVDS VPTAKLSLGS VATVNNLIAC TVERIKASLS  720
CESA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011493.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X5
RefseqXP_011011494.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X5
RefseqXP_011011495.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X5
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A3N7EKD30.0A0A3N7EKD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s23080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2