PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031942.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 259aa    MW: 29617.3 Da    PI: 6.789
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031942.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-193494357
                 --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+t+t++q+++L+el++    r p+ +e+++++++l    +++ ++V++WFqN++a+e++
  CCG031942.1 34 TRWTPTTDQIRILKELYYIkgVRSPNGAEIQQISARLrkygKIEGKNVFYWFQNHKARERQ 94
                 8****************95469*************************************97 PP
2Wus_type_Homeobox111.35.2e-363296265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+Pn +eiq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
        CCG031942.1 32 TSTRWTPTTDQIRILKELYYiKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKK 96
                       789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.092995IPR001356Homeobox domain
SuperFamilySSF466895.99E-112999IPR009057Homeodomain-like
SMARTSM003897.6E-53199IPR001356Homeobox domain
CDDcd000865.63E-63496No hitNo description
PfamPF000468.8E-173494IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-63494IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDPQQQQQHQ NQQQPNEDNN GGAKGNFICR QTSTRWTPTT DQIRILKELY YIKGVRSPNG  60
AEIQQISARL RKYGKIEGKN VFYWFQNHKA RERQKKRLTN EVPMQQRTAW KPEDYYSYKY  120
SGFSSASSSS NTGMVTVGQA DNYGYGSVNM QEKKNWDCSV PAGGESMNNI NYGSRGGINP  180
YSSSYTVFDQ DQEAAEKIET LPLFPMHGED ISTSFNINNI NPDVYYSSWY GSDDYGNATT  240
SRTSLELSLY SYNGQQQDY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2320630.0FJ232063.1 Populus tomentosa wuschel 1 mRNA, complete cds.
GenBankKR4933830.0KR493383.1 Populus tomentosa Wuschela mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043203.11e-177PREDICTED: protein WUSCHEL
SwissprotQ8LL112e-65WUS_PETHY; Protein WUSCHEL
TrEMBLA0A172CMI01e-166A0A172CMI0_POPTO; Wuschela
STRINGPOPTR_0005s11680.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-36WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]