PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13414.8 Da PI: 11.232 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.5e-14 | 5 | 91 | 2 | 87 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 kvl + + ++rl++p +f+++ gg ++ + d sgr+W +++++rkk+ v++kGW Fv ++ Lk+gD v F +++ CCG031737.1 5 SKVLRK--TDIKKRLSVPTRFLSSLpsfnaGG---HAVDFRAVDGSGRVWAFRCSIRKKGHPkPVISKGWLAFVASKSLKVGDKVQFLKEKN 91 566633..333457********9999876433...457899999999*******886665546************************85544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.051 | 2 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.95E-18 | 3 | 92 | No hit | No description |
SuperFamily | SSF101936 | 2.75E-14 | 4 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0017 | 4 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-18 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.6E-11 | 5 | 91 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MARFSKVLRK TDIKKRLSVP TRFLSSLPSF NAGGHAVDFR AVDGSGRVWA FRCSIRKKGH 60 PKPVISKGWL AFVASKSLKV GDKVQFLKEK NEAGAKTHAY EIRAEKEIKI FGAVLGYAPI 120 I |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-156 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006364.1 | 2e-74 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | U7E1T2 | 5e-76 | U7E1T2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01750.1 | 4e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 5e-08 | B3 family protein |