PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031733.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 131aa    MW: 14648.9 Da    PI: 10.7295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031733.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.8e-13491188
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f k+l++ dv k  rl +p + +++    +g     +  +  desg++W++k+++rk++    vl+k W  Fv+++gLk+gD++ F+ + ++
  CCG031733.1  4 FSKKLSKTDVRK--RLAVPTRSLSSLpsfDGA--HAVYFQAVDESGEVWTFKCSIRKRRHPkPVLSKDWLAFVDSKGLKAGDMIEFHKETNK 91
                 778896666655..5999****9999976444..56778999***********8855554469***********************943333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6142103IPR003340B3 DNA binding domain
SMARTSM010194.7E-44103IPR003340B3 DNA binding domain
CDDcd100171.46E-17488No hitNo description
Gene3DG3DSA:2.40.330.108.5E-17499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-134101IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-10492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAKFSKKLSK TDVRKRLAVP TRSLSSLPSF DGAHAVYFQA VDESGEVWTF KCSIRKRRHP  60
KPVLSKDWLA FVDSKGLKAG DMIEFHKETN KAATAHAYRV RAERQIKIFG VVFGYAPITA  120
ISHDPSNVSA I
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.17e-93PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
TrEMBLA0A2K1XGJ65e-85A0A2K1XGJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0248s00220.16e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-08related to ABI3/VP1 2