PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031732.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 118aa    MW: 13203.7 Da    PI: 10.809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031732.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.7e-13491188
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f kvl  s +  ++rl +p ++++   +++  +s++ +  d +g++W++k+++rkk+    v++kGW  Fv +++Lk+g  + F+ ++++
  CCG031732.1  4 FSKVL--SKTDIKKRLAVPTNYLKFLpSLNGGCSVDFKAIDAKGKVWTFKCSIRKKGHPkPVISKGWLAFVGSKKLKAGYKIRFYKENSK 91
                 66778..555556789*******777*88888*******************886665546************************933322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-14399IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-54103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-174100IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-17491No hitNo description
PfamPF023629.0E-10492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
METFSKVLSK TDIKKRLAVP TNYLKFLPSL NGGCSVDFKA IDAKGKVWTF KCSIRKKGHP  60
KPVISKGWLA FVGSKKLKAG YKIRFYKENS KVTATHVFTV QAEKEIKIFG AVFGYAPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RKKGHPKPVISKGWLAFVGSKKLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-166AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.15e-50PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9IDT91e-74B9IDT9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01810.12e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-09B3 family protein