PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 291aa MW: 33340.5 Da PI: 10.3096 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqv+fskRr g++KKA+ELS+LCdae+a+++fs tgk++eys+ CCG031655.1 9 KKIDNTTARQVSFSKRRRGLFKKAFELSILCDAEIALMVFSATGKFFEYSN 59 68***********************************************95 PP | |||||||
2 | K-box | 45.8 | 2.6e-16 | 92 | 171 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 la L+k i re+R+ GedL+ L+++eL++Le+ +e sl ++ ++K e +l++++ l+ ke++l een++L+++l+ CCG031655.1 92 VLAMLNKDIADKTRELRRARGEDLQGLNMEELEKLEKLIEGSLCRVMETKGEKILREVDALKSKEHQLIEENQRLKQRLM 171 45667777777789**************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.142 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-28 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.31E-35 | 3 | 68 | No hit | No description |
PRINTS | PR00404 | 9.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.937 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-12 | 93 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MTRKKIQIKK IDNTTARQVS FSKRRRGLFK KAFELSILCD AEIALMVFSA TGKFFEYSNS 60 SIGQVIERRN LHPKNLDTFS QPSVELQLDS AVLAMLNKDI ADKTRELRRA RGEDLQGLNM 120 EELEKLEKLI EGSLCRVMET KGEKILREVD ALKSKEHQLI EENQRLKQRL MSLTKGQGHL 180 LEKGQSSDSM VTNISSNSAN RRQDYDNICS FLTLGPVCYV FLLLLLCFGW RRSRGCRCRG 240 PSITDFHSYW QIYGVGQVRK EEDNAATATT RGRKTIMGRC PRRLRKEKPA G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-18 | 1 | 98 | 1 | 90 | MEF2C |
5f28_B | 7e-18 | 1 | 98 | 1 | 90 | MEF2C |
5f28_C | 7e-18 | 1 | 98 | 1 | 90 | MEF2C |
5f28_D | 7e-18 | 1 | 98 | 1 | 90 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 287 | RRLRKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144739 | 0.0 | EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043061.1 | 1e-153 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 1e-67 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A9P9A5 | 1e-140 | A9P9A5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_015454m | 2e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-61 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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