PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031655.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 291aa    MW: 33340.5 Da    PI: 10.3096
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031655.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.2e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n++ rqv+fskRr g++KKA+ELS+LCdae+a+++fs tgk++eys+
  CCG031655.1  9 KKIDNTTARQVSFSKRRRGLFKKAFELSILCDAEIALMVFSATGKFFEYSN 59
                 68***********************************************95 PP
2K-box45.82.6e-16921712099
        K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   la L+k i    re+R+  GedL+ L+++eL++Le+ +e sl ++ ++K e +l++++ l+ ke++l een++L+++l+
  CCG031655.1  92 VLAMLNKDIADKTRELRRARGEDLQGLNMEELEKLEKLIEGSLCRVMETKGEKILREVDALKSKEHQLIEENQRLKQRLM 171
                  45667777777789**************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.142161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-28273IPR002100Transcription factor, MADS-box
CDDcd002653.31E-35368No hitNo description
PRINTSPR004049.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.93786176IPR002487Transcription factor, K-box
PfamPF014861.1E-1293170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTRKKIQIKK IDNTTARQVS FSKRRRGLFK KAFELSILCD AEIALMVFSA TGKFFEYSNS  60
SIGQVIERRN LHPKNLDTFS QPSVELQLDS AVLAMLNKDI ADKTRELRRA RGEDLQGLNM  120
EELEKLEKLI EGSLCRVMET KGEKILREVD ALKSKEHQLI EENQRLKQRL MSLTKGQGHL  180
LEKGQSSDSM VTNISSNSAN RRQDYDNICS FLTLGPVCYV FLLLLLCFGW RRSRGCRCRG  240
PSITDFHSYW QIYGVGQVRK EEDNAATATT RGRKTIMGRC PRRLRKEKPA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-18198190MEF2C
5f28_B7e-18198190MEF2C
5f28_C7e-18198190MEF2C
5f28_D7e-18198190MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287RRLRKEK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447390.0EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043061.11e-153PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-67JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA9P9A51e-140A9P9A5_POPTR; Uncharacterized protein
STRINGcassava4.1_015454m2e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]