PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031654.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 39179.6 Da    PI: 7.0736
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031654.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.8e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n+s rqv+fskRr g++KKA+ELS+LCdae+a+++fs tgk++eys+
  CCG031654.1  9 KKIDNTSARQVSFSKRRRGLFKKAFELSILCDAEIALMVFSATGKFFEYSN 59
                 68***********************************************95 PP
2K-box45.53.3e-16921712099
        K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   +a L+kei +  re+R+  GedL+ L+++eL++Le+ +e sl ++ ++K e +l++++ l+ ke++l een++L+++l+
  CCG031654.1  92 VHAMLNKEIAEKTRELRRARGEDLQGLNMEELEKLEKLIEGSLCRVMETKGEKILREVDALKSKEHQLIEENQRLKQRLM 171
                  5678999999999***************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.931161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-27273IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-25323IPR002100Transcription factor, MADS-box
CDDcd002653.22E-34368No hitNo description
PfamPF003194.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.12986179IPR002487Transcription factor, K-box
PfamPF014861.4E-1294170IPR002487Transcription factor, K-box
PfamPF009962.3E-18219276IPR018203GDP dissociation inhibitor
Gene3DG3DSA:1.10.405.101.8E-12225276No hitNo description
SuperFamilySSF519051.42E-5295329IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005092Molecular FunctionGDP-dissociation inhibitor activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTRKKIQIKK IDNTSARQVS FSKRRRGLFK KAFELSILCD AEIALMVFSA TGKFFEYSNS  60
SIGQVIERRN LHPKNLDTFS QPSVELQLDS AVHAMLNKEI AEKTRELRRA RGEDLQGLNM  120
EELEKLEKLI EGSLCRVMET KGEKILREVD ALKSKEHQLI EENQRLKQRL MSLSKGQGHL  180
LAQGQSSDSM VTNISSNSAN RRQDYDNICS FLTLGFDFQI HKVQTTDVEA LKSPLMGLFE  240
KHHARKFFIY VQDYDDNDPK SHEGLDLTKI TTREVIVPIY EIFYDIYNKY VHENNEEDDH  300
RLISISYDTT TYFETTVQDV IAMYNKITEK VNISKFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18166166MEF2C
5f28_B8e-18166166MEF2C
5f28_C8e-18166166MEF2C
5f28_D8e-18166166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447390.0EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043063.11e-155PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY66e-68JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1X3701e-144A0A2K1X370_POPTR; Uncharacterized protein
STRINGXP_010254524.12e-84(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]