PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031641.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 401aa    MW: 45282.5 Da    PI: 5.158
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031641.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.23.1e-15213249135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg +   Tp +Rrgp g++tLCnaCGl+++ kg+
  CCG031641.2 213 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 249
                  *****88778************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.1E-476111IPR010399Tify domain
PROSITE profilePS5132012.05576111IPR010399Tify domain
PfamPF062008.3E-880110IPR010399Tify domain
PfamPF062033.1E-16144186IPR010402CCT domain
PROSITE profilePS5101713.314144186IPR010402CCT domain
SMARTSM004012.0E-10207260IPR000679Zinc finger, GATA-type
CDDcd002028.81E-14212256No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14212254IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.95E-11212263No hitNo description
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
PfamPF003205.4E-13213249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MELVNHQRQK KGRKGRDHHN RGVMQIEGVD YDYGYGFDDG TMEMINGGIV EEVRQINTKS  60
NYSGVVTGNR NDRVVETTRT SELTIAFEGE VYVFPAVTPS KVQAVLFLLG EPETSTIAPN  120
SEFFLQQNAR SAGDASQGLK FSRRIASLER FREKRKERCF EKKVRYTCRK EVAQRMHRKK  180
GQFASSNDCY STDTGNWEPS NGMPNPEFVL LRCQHCGISA KDTPAMRRGP AGPRTLCNAC  240
GLMWANKGTL RDLNKGGRHI SFNQNEPVTP DFKPLNMELE NPFANPEEEE SQEESKPVPL  300
ESENSIRPNE QDMLETDKNI PHPLPMHVEN SSVNLDDEDF ENTLDELGDV SGSEFEIPEH  360
FDDQFSKFTA TTYRSTSRIP VQGLRGMGLE IMLSACDVNP L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166011e-155AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043038.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-56GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N7G4330.0A0A3N7G433_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-50ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]