PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031611.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 294aa    MW: 32461.1 Da    PI: 4.559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031611.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-193987355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  CCG031611.1 39 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 87
                 56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7053895IPR001471AP2/ERF domain
SMARTSM003801.3E-3438101IPR001471AP2/ERF domain
CDDcd000181.04E-303894No hitNo description
Gene3DG3DSA:3.30.730.104.0E-293995IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-213996IPR016177DNA-binding domain
PRINTSPR003673.8E-83950IPR001471AP2/ERF domain
PfamPF008476.7E-124187IPR001471AP2/ERF domain
PRINTSPR003673.8E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFTHSTKTN STPSPSKNKR KQQQQQKNQN QQEQHEIRFL GVRRRPWGRY AAEIRDPSTK  60
ERHWLGTFDT AEEAALAYDR AARSMRGSKA RTNFVYSDMP PASSVTSIIS PDESQHDISA  120
LFAPPPQNHA HQNDTNCQKL YFSQDQYPFN AYAYGNSNSN LLTGGEGWVQ GCGAGAADGP  180
GGSYEPNNAG SFGLATEPIY FSNKDNIELP PLPPDVNSSC YGSDMDNGFW NDAEFFGFQE  240
EQKNNGNGLE ISGSSLAFDS NDYGQHGSLF EIMPSVSDTV TDELDLGSSS TLYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-203994359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020917.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLB9GYV00.0B9GYV0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.13e-37ERF family protein