PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031597.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 37741.2 Da PI: 6.6982 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.7 | 6.5e-28 | 43 | 137 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs +++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s + + ++l+ CCG031597.1 43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigpgQVEPKWASVSTYCKKHGVNRGPVQCRKRWSNLAGDYKKIKEWEASIRDETESFWFMRNDLR 137 8**********************97778888888**********************************************999999998888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 43 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.342 | 43 | 109 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.2E-12 | 43 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MALEQQLNLT PTQNSVDGER TNGVDTNIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE 60 NRVRRGRASG MGIGPGQVEP KWASVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIKEWEA 120 SIRDETESFW FMRNDLRRER KLPGFFDREV YDILDGGGGT VQELALALAP SSAAVEAETI 180 AEGVVFDSGR SAAAEDGLFS DFEQEEGGRS PEVVVKELQP IKAAVAIPTP ISEKQFQPAP 240 QTSQAQGSLN DKRPSSNPEM GSASQDDRKR KRYAIDGGEE TISSHSHLIH VLERNGKMLT 300 AQLEAQNTNF QLDREQRKDH ADGLVAVLNK LADALGKIAD KL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020876.1 | 0.0 | PREDICTED: uncharacterized protein LOC105123094 isoform X2 | ||||
Swissprot | Q8VZ20 | 1e-119 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | U5GJI3 | 0.0 | U5GJI3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-121 | Trihelix family protein |
Publications ? help Back to Top | |||
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