PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031536.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24263.3 Da    PI: 9.9324
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031536.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.6e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienks rqvtfskRrng++KKA ELSvLCd++vav++fss+gklye+ss
  CCG031536.2  9 KRIENKSSRQVTFSKRRNGLFKKARELSVLCDVQVAVLVFSSSGKLYEFSS 59
                 79***********************************************96 PP
2K-box38.16.5e-1479171698
        K-box   6 gksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++s++ ++a+ ++ ++a+Lk+   +Lq    R l G    +L l +L +Le+qL+  l+ +R++K +++le+++ l  +ek+l+een+ L+k+ 
  CCG031536.2  79 TSSKDVNHAKAYCDKHANLKSLP-ELQlMVERILEGPYAMELALSNLVELEKQLQATLTYVRARKIQMMLESVKSLHDQEKMLKEENQLLEKQE 171
                  44466788899********9865.5666778***********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-31275IPR002100Transcription factor, MADS-box
CDDcd002652.56E-38273No hitNo description
PRINTSPR004048.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-986170IPR002487Transcription factor, K-box
PROSITE profilePS512978.40887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010221Biological Processnegative regulation of vernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRKKVELKR IENKSSRQVT FSKRRNGLFK KARELSVLCD VQVAVLVFSS SGKLYEFSSV  60
GSITSILKHY MSHFKKMATS SKDVNHAKAY CDKHANLKSL PELQLMVERI LEGPYAMELA  120
LSNLVELEKQ LQATLTYVRA RKIQMMLESV KSLHDQEKML KEENQLLEKQ EKMLKEENQL  180
LEKQIEAMKN GTDSDHPLCH PPQQTTLSLL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18169169MEF2 CHIMERA
6byy_B2e-18169169MEF2 CHIMERA
6byy_C2e-18169169MEF2 CHIMERA
6byy_D2e-18169169MEF2 CHIMERA
6bz1_A2e-18169169MEF2 CHIMERA
6bz1_B2e-18169169MEF2 CHIMERA
6bz1_C2e-18169169MEF2 CHIMERA
6bz1_D2e-18169169MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020777.11e-153PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X2
TrEMBLA0A3N7EPU71e-116A0A3N7EPU7_POPTR; Uncharacterized protein
TrEMBLA0A3N7EUB61e-117A0A3N7EUB6_POPTR; Uncharacterized protein
TrEMBLA0A3N7FP291e-116A0A3N7FP29_POPTR; Uncharacterized protein
STRINGEOX997862e-54(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-41AGAMOUS-like 6