PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031532.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 986aa MW: 110093 Da PI: 5.3883

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031532.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.5	1.5e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwlk+ e++ iL+n++k+++t+e+ ++p+sgsl+L+n++++r+fr+DG+sw+kkkdg+tv E+he+LKvg+ve+++cyYah+e+np+fqrr+y CCG031532.1 13 EEaQTRWLKPAEVLFILQNHDKYQFTKEPLQKPTSGSLFLFNKRILRFFRRDGHSWRKKKDGRTVGEAHERLKVGNVETINCYYAHGEQNPNFQRRSY 110 55599******************************************************************************************* PP CG-1 100 wlLeeelekivlvhyle 116 w+L+ ++e+ivlvhy+e CCG031532.1 111 WMLDPAFEHIVLVHYRE 127 *************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.422	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-75	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.5E-48	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.1E-9	420	510	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	9.8E-10	425	508	IPR002909	IPT domain
CDD	cd00102	1.47E-5	425	509	No hit	No description
SuperFamily	SSF81296	5.6E-19	426	509	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.1E-15	621	717	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.618	623	715	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.35E-16	625	717	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.16E-9	643	715	No hit	No description
Pfam	PF12796	6.8E-7	644	716	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.381	656	688	IPR002110	Ankyrin repeat
SMART	SM00248	4.4E-4	656	685	IPR002110	Ankyrin repeat
SMART	SM00015	18	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.51	774	803	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.2E-8	776	879	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.24	827	849	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.95	828	857	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.021	830	848	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.8E-5	850	872	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.956	851	875	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.0E-5	853	872	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MLQSGYDINS LFEEAQTRWL KPAEVLFILQ NHDKYQFTKE PLQKPTSGSL FLFNKRILRF 60 FRRDGHSWRK KKDGRTVGEA HERLKVGNVE TINCYYAHGE QNPNFQRRSY WMLDPAFEHI 120 VLVHYREISE GKPSPGSAAQ LSPGFSYSPS SNTSQTQGSS SATSGVYEQH QSLSSPASVE 180 VNSGLDIKDN GVDSAAELTS FANNNVTQCL RRLEEQLSLN EDNIKEIGSF GGVEGATNDS 240 KILEYTNHIS KEDQSKNLHR GSQFIVDYQC YGGLSGKQLE RSNLAPLQDA GDSGAYQQSY 300 SQYYTDGSKE DLSWNEVFES YETSSGIEYQ VKYMETEKPK SSLMMETAQE QENSLWINFA 360 ETNVGNSSLL LPQEFEGFET PTYSSVIETH ENNADCYAML YDQGHLGIPI EADSSLTVAQ 420 QQKFSIREIS PEWGYATEAT KVIIVGSFLC DPSESSWTCM FGDTEVPLQI IQEGVIRCEA 480 PPHQPGKVTL CITSGNRESC SEIRDFDYRA EDSSCAHCNF SQTEASKSPE ELLLLVRFVQ 540 MLLSDSSLQR GDNIETGIHL LQKLKADDDS WGYIIEALLV GSGTSSTTVD WLLQQLLKDK 600 LRQWLSSKSQ EEHDHPGCSL SKKEQGIIHM VAGLGFEWAL SPILSHGVSI NFRDINGWTA 660 LHWAARFGRE KMVAALLASG ASAGAVTDPS SKDPIGKTAA SIAASGGHKG LAGYLSEVAL 720 TSHLSSLRLE ESELSKGSAE IEAERAVDSI SKVSFAANED QVSLKDTLAA VRNAAQAAAR 780 IQSAFRAHSF RKRQEIEASI LDEYGISAGD IQGLSAMSKL AFRNSQDINS AALSIQKKYR 840 GWKGRKDFLE LRQKVVKIQA HVRGYRVRKN YKVICWAVGI LDKVVLRWRR KGIGLRGFRN 900 EMESIDERED DDILKMFRKQ KVDGTIDEAF SRVLSMVDSP DARQQYRRML QRYRQAKDEL 960 GTSEAAASTS LADANEMEND DLYRFQ

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MLQSGYDINS LFEEAQTRWL KPAEVLFILQ NHDKYQFTKE PLQKPTSGSL FLFNKRILRF  60
FRRDGHSWRK KKDGRTVGEA HERLKVGNVE TINCYYAHGE QNPNFQRRSY WMLDPAFEHI  120
VLVHYREISE GKPSPGSAAQ LSPGFSYSPS SNTSQTQGSS SATSGVYEQH QSLSSPASVE  180
VNSGLDIKDN GVDSAAELTS FANNNVTQCL RRLEEQLSLN EDNIKEIGSF GGVEGATNDS  240
KILEYTNHIS KEDQSKNLHR GSQFIVDYQC YGGLSGKQLE RSNLAPLQDA GDSGAYQQSY  300
SQYYTDGSKE DLSWNEVFES YETSSGIEYQ VKYMETEKPK SSLMMETAQE QENSLWINFA  360
ETNVGNSSLL LPQEFEGFET PTYSSVIETH ENNADCYAML YDQGHLGIPI EADSSLTVAQ  420
QQKFSIREIS PEWGYATEAT KVIIVGSFLC DPSESSWTCM FGDTEVPLQI IQEGVIRCEA  480
PPHQPGKVTL CITSGNRESC SEIRDFDYRA EDSSCAHCNF SQTEASKSPE ELLLLVRFVQ  540
MLLSDSSLQR GDNIETGIHL LQKLKADDDS WGYIIEALLV GSGTSSTTVD WLLQQLLKDK  600
LRQWLSSKSQ EEHDHPGCSL SKKEQGIIHM VAGLGFEWAL SPILSHGVSI NFRDINGWTA  660
LHWAARFGRE KMVAALLASG ASAGAVTDPS SKDPIGKTAA SIAASGGHKG LAGYLSEVAL  720
TSHLSSLRLE ESELSKGSAE IEAERAVDSI SKVSFAANED QVSLKDTLAA VRNAAQAAAR  780
IQSAFRAHSF RKRQEIEASI LDEYGISAGD IQGLSAMSKL AFRNSQDINS AALSIQKKYR  840
GWKGRKDFLE LRQKVVKIQA HVRGYRVRKN YKVICWAVGI LDKVVLRWRR KGIGLRGFRN  900
EMESIDERED DDILKMFRKQ KVDGTIDEAF SRVLSMVDSP DARQQYRRML QRYRQAKDEL  960
GTSEAAASTS LADANEMEND DLYRFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020768.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2K2B8F5	0.0	A0A2K2B8F5_POPTR; Uncharacterized protein
STRING	POPTR_0001s13700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]