PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031312.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 314aa MW: 33751.8 Da PI: 8.2505

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031312.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182.5	1.8e-56	82	241	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel........kskkqsalsstklss 93 +C+dCGn+akk+C+++RCRtCCk rg++C+th+kstWvpaa+rrer + ++a+s+ kr+re+ ++++++a++s l + CCG031312.1 82 RACRDCGNRAKKECQYRRCRTCCKGRGYECTTHLKSTWVPAARRRERLGYSSGGGGSSASSSggGCIGGKRPRENvpatsnsfSTSNNNAAASFVLDT 179 57*******************************************988887777766666564445566666522222222334444444444444 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s lP +v+++avfrcvrv++++ +e+e+aY++ v+i+GhvfkG+LydqG++e CCG031312.1 180 G---------SsfqdasfkqsLPVQVHAPAVFRCVRVTAINSDEAEVAYEAKVNISGHVFKGFLYDQGMDE 241 4.........23444455557*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-54	82	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-24	84	125	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-23	192	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLGLRNILLI APPTSSCHHQ QPPPHVPSTH QITNTTDQYG IADNQESWNT LKKYPQESSF 60 LERGTLNVLQ DCDTAINIGP ARACRDCGNR AKKECQYRRC RTCCKGRGYE CTTHLKSTWV 120 PAARRRERLG YSSGGGGSSA SSSGGGCIGG KRPRENVPAT SNSFSTSNNN AAASFVLDTG 180 SSFQDASFKQ SLPVQVHAPA VFRCVRVTAI NSDEAEVAYE AKVNISGHVF KGFLYDQGMD 240 EKNLFPCISK MHSSERNRDS SSPIVDPPDA YAASGNQRLL EDPAKVPGCP GPGQAAGLAQ 300 MASLNLISVL TIAE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020409.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	8e-49	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2K2B9Q3	1e-175	A0A2K2B9Q3_POPTR; Uncharacterized protein
STRING	POPTR_0003s19550.1	1e-175	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-47	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]