PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031118.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 256aa MW: 28464.9 Da PI: 6.7936

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031118.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.5	2.7e-55	27	121	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eqdr+lPianvsrimkk lPanakisk+aketvqecvsefisf+t+eas+kcqrekrktingddllwa++tlGfe+yv plkvyl++yr++egek CCG031118.1 27 EQDRLLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASEKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNRYRDTEGEK 121 8*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-53	22	139	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-40	28	141	IPR009072	Histone-fold
Pfam	PF00808	2.5E-27	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.5E-19	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.5E-19	78	96	No hit	No description
PRINTS	PR00615	5.5E-19	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MTGKRTRISP IGSPLSENIS ESSSKLEQDR LLPIANVSRI MKKSLPANAK ISKEAKETVQ 60 ECVSEFISFI TGEASEKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKVY LNRYRDTEGE 120 KNSMARQEDQ LSPTNHGSLG THETIKVNGS SSLSTGMDLQ SSNAGHYSLG TEVTARSYGQ 180 NTRFFGFQES SMVGDFNMNT IRDHGDRNGN IAMAACEIKT AVVYLLNTPN MKHQPMSEAE 240 DQDIMILQSQ VNHSKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-46	27	116	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-46	27	116	3	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ161880	0.0	HQ161880.1 Populus euphratica nuclear transcription factor Y-alpha (NFYA) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025616.1	1e-158	PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A2K1ZR67	1e-145	A0A2K1ZR67_POPTR; Uncharacterized protein
TrEMBL	F8RS74	1e-146	F8RS74_POPEU; Nuclear transcription factor Y-alpha (Fragment)
STRING	POPTR_0007s06480.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-61	nuclear factor Y, subunit B3