PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG030864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 211aa MW: 22432 Da PI: 7.7352 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.9 | 9.3e-10 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC +L YP GA++V+CalC tV CCG030864.1 7 CRGCASVLLYPSGASNVCCALCSTV 31 9**********************99 PP | |||||||
2 | zf-LSD1 | 32.5 | 1.4e-10 | 100 | 119 | 6 | 25 |
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 lL+YP GA+ VRC++C+ V CCG030864.1 100 SLLMYPHGATTVRCSCCHVV 119 59****************98 PP | |||||||
3 | zf-LSD1 | 38.7 | 1.6e-12 | 133 | 157 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt L+YP G+psV+C++C+ V CCG030864.1 133 CGNCRTALMYPNGSPSVKCPVCHYV 157 **********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.8E-9 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-7 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-8 | 100 | 119 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.5E-9 | 101 | 120 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 1.4E-4 | 110 | 160 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 2.4E-11 | 130 | 160 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-11 | 133 | 157 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MQSQVVCRGC ASVLLYPSGA SNVCCALCST VTSIPSPGDG CFEELLIGKS FVEVVALNVV 60 YHSVVDKSDC FCMVECHLRS AMDLRIGMHN PGVTHRALKS LLMYPHGATT VRCSCCHVVN 120 VAPGYNQAAH VNCGNCRTAL MYPNGSPSVK CPVCHYVTNV SMANMRFPLP ANRPNGIGGT 180 APSTSMPLPH SQTQTVVVEN PMSVDESGKL L |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182684 | 7e-71 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011054.1 | 6e-96 | PREDICTED: protein LOL2-like isoform X1 | ||||
Refseq | XP_011011056.1 | 4e-96 | PREDICTED: protein LSD1-like isoform X3 | ||||
TrEMBL | A0A2K2CD28 | 1e-93 | A0A2K2CD28_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s43300.1 | 2e-94 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.6 | 6e-42 | LSD family protein |