PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030864.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 211aa    MW: 22432 Da    PI: 7.7352
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030864.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.99.3e-10731125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C gC  +L YP GA++V+CalC tV
  CCG030864.1  7 CRGCASVLLYPSGASNVCCALCSTV 31
                 9**********************99 PP

2zf-LSD132.51.4e-10100119625
      zf-LSD1   6 tlLsYPrGApsVRCalCdtV 25 
                   lL+YP GA+ VRC++C+ V
  CCG030864.1 100 SLLMYPHGATTVRCSCCHVV 119
                  59****************98 PP

3zf-LSD138.71.6e-12133157125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Crt L+YP G+psV+C++C+ V
  CCG030864.1 133 CGNCRTALMYPNGSPSVKCPVCHYV 157
                  **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.8E-9434IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-7731IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-8100119IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-9101120IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.101.4E-4110160IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010532.4E-11130160IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-11133157IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQSQVVCRGC ASVLLYPSGA SNVCCALCST VTSIPSPGDG CFEELLIGKS FVEVVALNVV  60
YHSVVDKSDC FCMVECHLRS AMDLRIGMHN PGVTHRALKS LLMYPHGATT VRCSCCHVVN  120
VAPGYNQAAH VNCGNCRTAL MYPNGSPSVK CPVCHYVTNV SMANMRFPLP ANRPNGIGGT  180
APSTSMPLPH SQTQTVVVEN PMSVDESGKL L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826847e-71AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011054.16e-96PREDICTED: protein LOL2-like isoform X1
RefseqXP_011011056.14e-96PREDICTED: protein LSD1-like isoform X3
TrEMBLA0A2K2CD281e-93A0A2K2CD28_POPTR; Uncharacterized protein
STRINGPOPTR_0001s43300.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.66e-42LSD family protein