PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 20783.7 Da PI: 5.5586 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H CCG030813.1 32 YECTFCKRGFSNAQALGGHMNIH 54 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.77E-7 | 29 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 29 | 58 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0099 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MMDTDDQTSH ENPDQVTLDH EQEQGTSQAR SYECTFCKRG FSNAQALGGH MNIHRKDKAK 60 LKHSSRETQQ SLDIPKINPS FSPAITSLME SERDESSIKW PFSIVDKAAG SDHDDTKRDK 120 TQVGEIQKLG FFVQNSSSTE DHQNPSSQVH GISKKSDLSS SSEIDLELRL WPEPQESSPG 180 TKKFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032298.1 | 1e-134 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A2K1Z299 | 1e-109 | A0A2K1Z299_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s04190.1 | 1e-108 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 5e-18 | C2H2 family protein |