PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030775.7
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 431aa    MW: 48102.9 Da    PI: 7.9201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030775.7genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06163181625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+ffar G+C +G+ C++ H
  CCG030775.7 163 CSFFAR-GECTRGAECPYRH 181
                  ******.**********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161319.1E-9135194IPR032297Torus domain
PROSITE profilePS5010314.258157184IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6157183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAHRLLKDPE ADGWERSDFP IICESCLGDN PYVRMTRADF DKECKICTRP FTVFRWRPGR  60
DARFKKTEVC QTCSKLKNVC QVCLLDLEYG LPVQVRDTAL SINSNDAIPK SDVNREYFAE  120
EHDRRARAGI DYESSYGKAQ ANDTILKLQR TTPYYKRNRA HVCSFFARGE CTRGAECPYR  180
HEMPITGELS QQNIKDRYYG PQAPKPEMES SDEARQQAAM AHSGMLPRAV VSQQHSHLNP  240
PGTQGQHPPM HYFNIPPPPQ QERAFYPSMD PQRMGALVGS QDGTPNGPAG SGENKSGLEK  300
QLGQHYPYQS MPPPHVQYQQ QHYPPYGYMP PVPPYQQYPL PYHTPVPLPQ GVQSTQKHQH  360
QHQHLVLQPM AAPAESMTSL PPPQGSQAPA GPMPSEPSSQ GSEAPAGSKT SSPPSPRPGE  420
SEKSKPSGPL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_P7e-821420415208Pre-mRNA-splicing factor RBM22
5xjc_O7e-821420415208Pre-mRNA-splicing factor RBM22
5yzg_O7e-821420415208Pre-mRNA-splicing factor RBM22
5z56_O7e-821420415208Pre-mRNA-splicing factor RBM22
5z57_O7e-821420415208Pre-mRNA-splicing factor RBM22
6ff4_P7e-821420415208Pre-mRNA-splicing factor RBM22
6ff7_P7e-821420415208Pre-mRNA-splicing factor RBM22
6icz_O7e-821420415208Pre-mRNA-splicing factor RBM22
6id0_O7e-821420415208Pre-mRNA-splicing factor RBM22
6id1_O7e-821420415208Pre-mRNA-splicing factor RBM22
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295981e-139CT029598.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344260.11e-167zinc finger CCCH domain-containing protein 4-like isoform X3
SwissprotQ6Z3581e-137C3H49_ORYSJ; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1R3HUH51e-162A0A1R3HUH5_COCAP; Zinc finger, CCCH-type
STRINGPOPTR_0009s04610.11e-147(Populus trichocarpa)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]