PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030709.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 469aa    MW: 52369.3 Da    PI: 6.4435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030709.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.95.7e-143454661374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v+sg le+a+ +L+++s+laspdgd+mqR+aayf+eALa+r+++ ++++ kal++++ +   +se++ ++klf++++P++k++++++
  CCG030709.1  45 LIHLLLTCANHVASGGLENAEIALSQISHLASPDGDTMQRIAAYFAEALARRIVKAWPGIDKALNATQIT--LVSEQILVRKLFYDMFPFMKVAFVLT 140
                  689***************************************************************9998..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+ege++vH+iD+ + +++QW+aLlqa++ Rpegpp+lRiTg+++    +k  l +++++L + Ae+l++pf+fn+ ++++le+l++e+Lrv
  CCG030709.1 141 NQAIIEAMEGEKMVHVIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHP----QKGVLDQMAHKLIEEAEKLDIPFQFNP-IVSKLENLDIEKLRV 233
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll.........................................................desvsleserdevLklvkslsPk 237
                  k+gEala++++lqlh++l                                                         ++++s+  + d++L+++++lsPk
  CCG030709.1 234 KTGEALAISSILQLHSFLasddelrkkspsilknsnginmqrvlqmnqstlgellekdtangcspspdsasssplSSTASV--KMDSFLNFLWGLSPK 329
                  *********************************************************************886654333333..4699*********** PP

         GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                  ++vv+eq+++hn+++++er+leal++y+alfd+le++++r+s er kvE++l+g ei+n++acega+r+erhe+lekW +rl+ aGF++v+ls++ + 
  CCG030709.1 330 LMVVTEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKMLFGDEIKNIIACEGAARKERHEKLEKWIQRLDLAGFGNVSLSYYGML 427
                  ************************************************************************************************** PP

         GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ll+ ++ dgyr++ee+gs+v++W+drpL+svSaWr
  CCG030709.1 428 QARRLLQGYGCDGYRMKEENGSVVICWQDRPLFSVSAWR 466
                  **************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.02719446IPR005202Transcription factor GRAS
PfamPF035142.0E-14045466IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYQDDGSSVT SSPLQVFSTM PVSPSMGSPY PWVRELKSEE RGLYLIHLLL TCANHVASGG  60
LENAEIALSQ ISHLASPDGD TMQRIAAYFA EALARRIVKA WPGIDKALNA TQITLVSEQI  120
LVRKLFYDMF PFMKVAFVLT NQAIIEAMEG EKMVHVIDLH AAEPAQWIAL LQAFSVRPEG  180
PPHLRITGIH PQKGVLDQMA HKLIEEAEKL DIPFQFNPIV SKLENLDIEK LRVKTGEALA  240
ISSILQLHSF LASDDELRKK SPSILKNSNG INMQRVLQMN QSTLGELLEK DTANGCSPSP  300
DSASSSPLSS TASVKMDSFL NFLWGLSPKL MVVTEQDSNH NGSTLMERLL EALYTYAALF  360
DCLESTVSRT SMERLKVEKM LFGDEIKNII ACEGAARKER HEKLEKWIQR LDLAGFGNVS  420
LSYYGMLQAR RLLQGYGCDG YRMKEENGSV VICWQDRPLF SVSAWRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-46454664375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089400.0AC208940.1 Populus trichocarpa clone JGIACSB1085-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032084.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB9HP160.0B9HP16_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]