PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 52369.3 Da PI: 6.4435 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 467.9 | 5.7e-143 | 45 | 466 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl+cA++v+sg le+a+ +L+++s+laspdgd+mqR+aayf+eALa+r+++ ++++ kal++++ + +se++ ++klf++++P++k++++++ CCG030709.1 45 LIHLLLTCANHVASGGLENAEIALSQISHLASPDGDTMQRIAAYFAEALARRIVKAWPGIDKALNATQIT--LVSEQILVRKLFYDMFPFMKVAFVLT 140 689***************************************************************9998..7************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaI ea+ege++vH+iD+ + +++QW+aLlqa++ Rpegpp+lRiTg+++ +k l +++++L + Ae+l++pf+fn+ ++++le+l++e+Lrv CCG030709.1 141 NQAIIEAMEGEKMVHVIDLHAAEPAQWIALLQAFSVRPEGPPHLRITGIHP----QKGVLDQMAHKLIEEAEKLDIPFQFNP-IVSKLENLDIEKLRV 233 ***************************************************....9**************************.7999*********** PP GRAS 197 kpgEalaVnlvlqlhrll.........................................................desvsleserdevLklvkslsPk 237 k+gEala++++lqlh++l ++++s+ + d++L+++++lsPk CCG030709.1 234 KTGEALAISSILQLHSFLasddelrkkspsilknsnginmqrvlqmnqstlgellekdtangcspspdsasssplSSTASV--KMDSFLNFLWGLSPK 329 *********************************************************************886654333333..4699*********** PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 ++vv+eq+++hn+++++er+leal++y+alfd+le++++r+s er kvE++l+g ei+n++acega+r+erhe+lekW +rl+ aGF++v+ls++ + CCG030709.1 330 LMVVTEQDSNHNGSTLMERLLEALYTYAALFDCLESTVSRTSMERLKVEKMLFGDEIKNIIACEGAARKERHEKLEKWIQRLDLAGFGNVSLSYYGML 427 ************************************************************************************************** PP GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 qa++ll+ ++ dgyr++ee+gs+v++W+drpL+svSaWr CCG030709.1 428 QARRLLQGYGCDGYRMKEENGSVVICWQDRPLFSVSAWR 466 **************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.027 | 19 | 446 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-140 | 45 | 466 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MYQDDGSSVT SSPLQVFSTM PVSPSMGSPY PWVRELKSEE RGLYLIHLLL TCANHVASGG 60 LENAEIALSQ ISHLASPDGD TMQRIAAYFA EALARRIVKA WPGIDKALNA TQITLVSEQI 120 LVRKLFYDMF PFMKVAFVLT NQAIIEAMEG EKMVHVIDLH AAEPAQWIAL LQAFSVRPEG 180 PPHLRITGIH PQKGVLDQMA HKLIEEAEKL DIPFQFNPIV SKLENLDIEK LRVKTGEALA 240 ISSILQLHSF LASDDELRKK SPSILKNSNG INMQRVLQMN QSTLGELLEK DTANGCSPSP 300 DSASSSPLSS TASVKMDSFL NFLWGLSPKL MVVTEQDSNH NGSTLMERLL EALYTYAALF 360 DCLESTVSRT SMERLKVEKM LFGDEIKNII ACEGAARKER HEKLEKWIQR LDLAGFGNVS 420 LSYYGMLQAR RLLQGYGCDG YRMKEENGSV VICWQDRPLF SVSAWRCRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-46 | 45 | 466 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208940 | 0.0 | AC208940.1 Populus trichocarpa clone JGIACSB1085-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032084.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | B9HP16 | 0.0 | B9HP16_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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