PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030655.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 368aa MW: 40866.3 Da PI: 5.223

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030655.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.5e-06	234	294	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + +a++ + A+kl ++t +q k+W Nr+a+ CCG030655.2 234 KRKRTIMNDYQIALMEKALLDEPEMqrNAAALQSWADKLslngsEVTSSQLKNWLNNRKAR 294 79***************99777722567899**9999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-5	223	297	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.18E-5	228	297	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.058	231	298	IPR001356	Homeobox domain
SMART	SM00389	3.5E-5	233	302	IPR001356	Homeobox domain
CDD	cd00086	6.88E-5	234	297	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MRMDPSKSLP GFSFASGAQR AVTVCRNLRS LLSHAESLIP NFLNDEDVQL LRVFFNQLQS 60 LINPADFEEN QVQEIKSERS ISLDKFSRLS IDEHLQEAQS TRASSSPMAR KEPSSLNNRT 120 DIQKEEMSEN SAIQEEEKHS FRNEHMNQAN VMRGDKAKSG ACTSDVLREM DRDSHNVETS 180 GSDTSSTRGK TFVGQVVNGD LPKSSAHIKG SGCQGVRNGE KAESLHFEEK QPRKRKRTIM 240 NDYQIALMEK ALLDEPEMQR NAAALQSWAD KLSLNGSEVT SSQLKNWLNN RKARLARAGK 300 DVRAPMEVDI TFPENQVGQA LQHESPESPG EDNITSTVRG LQNTSEIGVY EDPEAGIGLS 360 DFVDIGAS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MRMDPSKSLP GFSFASGAQR AVTVCRNLRS LLSHAESLIP NFLNDEDVQL LRVFFNQLQS  60
LINPADFEEN QVQEIKSERS ISLDKFSRLS IDEHLQEAQS TRASSSPMAR KEPSSLNNRT  120
DIQKEEMSEN SAIQEEEKHS FRNEHMNQAN VMRGDKAKSG ACTSDVLREM DRDSHNVETS  180
GSDTSSTRGK TFVGQVVNGD LPKSSAHIKG SGCQGVRNGE KAESLHFEEK QPRKRKRTIM  240
NDYQIALMEK ALLDEPEMQR NAAALQSWAD KLSLNGSEVT SSQLKNWLNN RKARLARAGK  300
DVRAPMEVDI TFPENQVGQA LQHESPESPG EDNITSTVRG LQNTSEIGVY EDPEAGIGLS  360
DFVDIGAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	235	KQPRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451147.1	0.0	nodulin homeobox isoform X5
TrEMBL	A0A3N7EM79	0.0	A0A3N7EM79_POPTR; Uncharacterized protein
STRING	POPTR_0002s22800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3869	4	6