PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030653.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 308aa    MW: 32885.7 Da    PI: 7.4735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030653.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
      CCG030653.1 12 WTREHDKAFENALATYPEDasdRWEKIAEDVP-GKTLEEIKHHYE 55
                     ********************************.**********96 PP
2Myb_DNA-binding41.92.3e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
      CCG030653.1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.914762IPR017884SANT domain
SMARTSM007172.2E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-51062IPR009057Homeodomain-like
CDDcd001673.01E-91258No hitNo description
PfamPF002492.6E-81255IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-111265IPR009057Homeodomain-like
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.24E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
PfamPF002492.8E-11122166IPR001005SANT/Myb domain
CDDcd001679.43E-10122167No hitNo description
Gene3DG3DSA:1.10.10.601.5E-10122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSVDEGGSGS LWTREHDKAF ENALATYPED ASDRWEKIAE DVPGKTLEEI KHHYELLVED  60
INQIEAGCVP LPCYSSSSEG STSHAGDEGT GKKGGHLGHH NSEFNHGNKA SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDIATPQGPI TGQTNGSAVA GSSGKAAKQP PPHPAGPPGV GIYGPPTIGQ  240
PIGGPLVSAV GTPVNLSAPA HVAYGVRAPV PGPMVPGAPM NMSPMTYPMP PTTTHRFCAS  300
VYLQAKVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-19777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175840.0AC217584.1 Populus trichocarpa clone POP021-G16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009177.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011009178.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011009179.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011009180.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-130SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2K1ZQU30.0A0A2K1ZQU3_POPTR; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-100MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]