PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG030601.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 767aa MW: 83872.1 Da PI: 6.1963 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ CCG030601.2 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 767 aa Download sequence Send to blast |
MDTCSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAVAKG VPIGEALEID IPPPRPKRKP SNPYPRKTGV GPPTSQAGAR 120 DGKLLTSTSS PHCRKVSDLE KEPRPEKPNG DERPTSAKEN QDDNCSEVFT LLQEAHCSSV 180 ASVNKNCVPA LEVLKKTSSF REFVPSPKKG NHDACNESFI TVEHEANQKL DSSDANQTVL 240 DNGTVKASKS ENACSLHEIL FQQKKSDDFT GALRTDGMQT MQNYPRHVPV HVLDGSLGTC 300 METPSDLSFQ DSMFHPVGDI PACPILYSHP AGSTTTDHPT NLPRSSMHQS FPFFPPFTPI 360 HHNQDDYRSF LPISSTFSSP VVSTLLQNPA AHAAASFAAT FWPYGNVESS ADSPACALEC 420 FQSGQINSAP SMAAIAAATV AAATAWWAAH GLLPICAPLH TAFACPPASA TAIQPADTDQ 480 VPPAKPERKE TTPDNPPLQG EIQDLEHSEA VQAQNSASKP PSLSSSDSEE SGGTKLNTGP 540 KVTDHELNSK ASEVQDSGKT KSRKQVDRSS CGSNTPSSSE IETDALEKTE KGKEEPKEAD 600 VNHPAYELNC RRSRSSSSMS DSWKEVSEEG RLAFQALFTR EILPQSFSPP HDLKSKMHQK 660 EDTEEKKDPD ENDGDASLLD LNSKTWGYCS GYREGEKNAV VPRCVNDGEE GLLTIGLGHR 720 NLKAHLTGFK PYKRCSLEAK ESRVGITGGQ DEEKGPKRLR LEREASV |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB429410 | 0.0 | AB429410.1 Populus nigra PnLHY1 mRNA for transcription factor LHY, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025352.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_011025353.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_011025354.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_011025355.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_011025356.1 | 0.0 | PREDICTED: protein LHY-like | ||||
TrEMBL | B9GRS2 | 0.0 | B9GRS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18190.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-123 | MYB_related family protein |