PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030596.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 358aa    MW: 40744.5 Da    PI: 9.4964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030596.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.3e-3260164199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  CCG030596.1  60 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGvGEsGKHRL 157
                  89****************************66677899*************************************************66577788889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  CCG030596.1 158 FIDWRRR 164
                  9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-4351170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3057165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-2758159No hitNo description
PfamPF023621.9E-2960164IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7960165IPR003340B3 DNA binding domain
SMARTSM010192.3E-2260165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWPGSFDQSQ QDSKTQEPSL NFDKKLELME LSLGNNNETE STSAAAVVGA RESIEREHMF  60
DKVVTPSDVG KLNRLVIPKQ HAERYFPLDS SSNEKGLLLN FEDRNGKPWR FRYSYWNSSQ  120
SYVMTKGWSR FVKEKRLDAG DIVSFQRGVG ESGKHRLFID WRRRPNAPDP TTFSHSELQN  180
QQHYPQSVRW GRLYSMPQSN LSMQQPQLRH LNYSIHPYQQ QQHQNRNHQN HYHQPSTISY  240
GNSALYYLRP SETLQIGAMH QQAGGSHVPL VIDSVPVVHG KTAGKRLRLF GVNMDCPTQD  300
EDQSSSITMA HGTMGSFSSH LASSSLLPPL QLRAPTSAPM QAEVLKKGKN SFSFDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-68551673116B3 domain-containing transcription factor NGA1
5os9_B3e-68551673116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025335.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025337.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025338.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025339.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025340.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025341.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025342.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025343.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025344.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011025345.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827997e-95NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GT980.0U5GT98_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-87B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]