PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030525.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 272aa    MW: 29026.7 Da    PI: 8.8572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030525.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-086085227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 k +lC+ +     Ck+Gd+C+FaHg+
  CCG030525.1 60 KSRLCNKYNTVEGCKFGDKCHFAHGE 85
                 6789999999999***********96 PP
2zf-CCCH34.92.5e-11239263126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C +f + G C +GdrC+FaHg
  CCG030525.1 239 FKTKICENFNK-GSCTFGDRCHFAHG 263
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.394123IPR000571Zinc finger, CCCH-type
PfamPF146082.21020No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-135688IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-75788IPR000571Zinc finger, CCCH-type
SMARTSM003560.00565885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2815886IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-56085IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-14137217IPR004088K Homology domain, type 1
SMARTSM003226.1E-12145215IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-15145217IPR004088K Homology domain, type 1
PROSITE profilePS5008414.236146210IPR004088K Homology domain, type 1
PfamPF000136.8E-11148211IPR004088K Homology domain, type 1
CDDcd001056.60E-14148210No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-16236269IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7238264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-8238268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868238265IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9239263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLLFCSTSGC PFGEGCHFLH YVPGGYKAVS QMLPALPPAS RNQGVPPPSF PDRSSPPSVK  60
SRLCNKYNTV EGCKFGDKCH FAHGEWELGK ASAASYDDPR AMGPMQGRAA GPYDDPRAMG  120
SIPGRMSRHM EHPHQGHGAA ASFGSSATTK ISIDASLAGA IIGKNGVNSK HICRATGAKL  180
SIREHETDPK KRNIELEGSF DQISQASDMV RQLISNVGQA SGPPMKNSSM HSSGGSNNFK  240
TKICENFNKG SCTFGDRCHF AHGAEELRKS GM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396551e-160FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396561e-160FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396571e-160FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396581e-160FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396591e-160FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396601e-160FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396611e-160FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396621e-160FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396631e-160FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396641e-160FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396651e-160FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396661e-160FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396671e-160FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396681e-160FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396691e-160FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396701e-160FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396711e-160FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396721e-160FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396731e-160FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396741e-160FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025224.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-89C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9GYL20.0B9GYL2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21780.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-50C3H family protein