PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030364.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 626aa    MW: 68712.3 Da    PI: 6.5208
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030364.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.41.4e-29154210158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++I++RR++Rak+  e+k  ++srkpy+h SRh hA+rRpRg+gGrF
  CCG030364.1 154 DGPIYVNAKQYHGIMRRRKSRAKAVLENKS-TTSRKPYMHYSRHLHAMRRPRGCGGRF 210
                  57***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-32152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.899153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-25156210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-21156178IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-21187210IPR001289Nuclear transcription factor Y subunit A
Gene3DG3DSA:3.30.70.3301.3E-27411497IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.12E-48418596IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010219.331418496IPR000504RNA recognition motif domain
SMARTSM003601.0E-27419492IPR000504RNA recognition motif domain
CDDcd123997.23E-35419495No hitNo description
PfamPF000764.8E-21420490IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3305.5E-24518601IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010218.479521599IPR000504RNA recognition motif domain
SMARTSM003601.6E-24522595IPR000504RNA recognition motif domain
PfamPF000765.2E-18523593IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MTMKVKEHEG IVHNPSGQLS TVPWWTAFGS QAVTGESCGL LRALPVEQLA TGGEAATKQA  60
RMSTDQRLDK RNITQFTIFP GDCKTSGDGQ KNLQAAISLQ TALPEYRAHF DMGYGQPVIC  120
TKYPLVDQCY GVFSTFGPQI SGRIMLPMSM TADDGPIYVN AKQYHGIMRR RKSRAKAVLE  180
NKSTTSRKPY MHYSRHLHAM RRPRGCGGRF LNTRELNEGK GTMEAKKAGD FQLSQATVSQ  240
NSEVLESVGA TLNSSMEANG GGSILSGSEV TSMYNRGELD LLQINHLGPT FHSFSGMMDR  300
RHGIVMPTST ITSSPLHTKL SKLSFTHSQL PIPSCFLSKP FLKPLKPLKL NSQNSNSLLL  360
LSIAPSHGTF AASFDNFEVE TDENITAQDD SQSETDEFDQ EIVEEEGNVG AIKAREEGKL  420
YVGNLPYSMT SSELAEVFEA AGRVFSAEVI CDRVTDRSRG FGFVTMESVE EAKEAIRMFN  480
GSQVGGRTLR VNFPEVPRGG EREVMEPRIR SGYKGFIDSE HKLYAGNLGW RLTSEGLRDA  540
FANQPGLLSA KVIYERDTGR SRGFGFVSFE SAENAEAALE AMNGEEVEGR PLRLNLAGER  600
SYPPPAKENN TENNLESSEL LSSIGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mmj_v2e-354195978526030S ribosomal protein 2, chloroplastic
5mmm_v2e-354195978526030S ribosomal protein 2, chloroplastic
5x8p_v9e-3641959723198protein cS22
5x8r_v9e-3641959723198protein cS22
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172MRRRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1475690.0EF147569.1 Populus trichocarpa clone WS0123_I05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042570.10.0PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBLA0A1J7HEZ80.0A0A1J7HEZ8_LUPAN; Uncharacterized protein
STRINGPOPTR_0016s06860.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-56nuclear factor Y, subunit A10