PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 324aa MW: 35638.2 Da PI: 8.5242 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.5 | 3.7e-34 | 69 | 123 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e CCG030309.1 69 TYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPE 123 7***************************9999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-28 | 69 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-31 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.944 | 70 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-29 | 196 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.43E-18 | 197 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-25 | 205 | 262 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDITPATATA TTTTNNNTNT TIPKSPEADT GTPTRIPQTK PSSFTNGVLK RHHPHHHHNH 60 FSQPPVIKTY KECLKNHAAT IGGHALDGCG EFMPSPTATH TDPTSLKCAA CGCHRNFHRR 120 EPEDPPPHTT AITTIEYQPH HRHHPPPPLA QPQHNRSPNS ASPPPISSSY YPSAPHMLLA 180 LSGGVSGLNE NVNINAPPRA GSSPRKRFRT KFSQGQKERM HQFAEKVGWK MQKGDEDLVQ 240 EFCNEVGVDR SALKVWMHNN KNSFGKKEHL NGNNDDVIRS SNLENSCSNN ESNKDITNNN 300 NNHHHFENDS HAAHVGTNGS SSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-19 | 206 | 263 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227236 | 0.0 | CU227236.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU228827 | 0.0 | CU228827.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU229016 | 0.0 | CU229016.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010943.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 1e-75 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2K2ATR0 | 1e-163 | A0A2K2ATR0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s12500.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 7e-68 | homeobox protein 34 |
Publications ? help Back to Top | |||
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