PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 668aa MW: 73415.5 Da PI: 5.8272 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.4 | 8.9e-109 | 292 | 668 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++++e+A a+ +g++ ++L+r+ + a+p+g++ qRl y++ AL++r+++ k+ +++e s+e++ a++ ++++sP++k+++++aN CCG030097.1 292 KQTIIEAASAIYEGKTDVYPEILSRICQVANPQGNSEQRLMEYMLMALKSRVNS----AEKTPSVRELY---SKEHVDATQSLYDLSPCFKLGFMAAN 382 57899************************************************9....44444555554...99999********************* PP GRAS 100 qaIleavege....erv.....HiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 aI ea+ ++ + H++Dfdi+qG+Q+++Ll+aL+ ++ +p+ ++iT+v++ ++g ++e+l+++ge L+++A++lg+++ fnv v+ r CCG030097.1 383 LAIIEATREQgremN-ScsngfHVVDFDIGQGGQYMNLLHALSgLQNLKPAIVKITAVAADSNGgeEEERLRRVGEMLSQLAQRLGLSLCFNV-VSCR 478 *******99975541.045556*********************66667888*********9999999*************************9.799* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l++l+ e+L ++p+E+laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e+++yy alfds+++++ r+s++r+ CCG030097.1 479 LSELSRESLGCEPEETLAVNFAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTIVEQEMNTNTAPFMARVNESCSYYGALFDSIDSTMERDSSQRA 576 ************************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE+ lgr +vn vaceg++r+er+e ++kWr+r+++aGF+ p+s+ +a+++k+ l+ ++ + g++v+ee+g +++gWk+++L+++SaWr CCG030097.1 577 RVEEG-LGRTLVNSVACEGRDRIERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLNLTNrvNPGFTVKEENGGVCFGWKGKTLTVASAWR 668 *****.****************************************************999987889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.772 | 265 | 646 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-106 | 292 | 668 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MASGFSSGGG GGGGGGGGGG FQDFYTNRSS LPTMNLSNNP SSLPPYRTNQ IFLDQNLSSH 60 NYQQIAQHRA ILPTSMNATT AATTATPTLI GKRSLADFQS PPQQNLLNQA ALNNLLLRSV 120 KPRINNNLFQ QNTSPISTLS PIDFSVNNLS PQLPNLMPQR YSLPLLQQLR SHQQQQRPMN 180 LMSSNGVINN NNNNMMPYVN MLQNQNGGGN GVVMGQDREK KMLNQLQELE KQLLDDDDDN 240 QEGDDASVIT NTNSEWSETI QNLMSSCNNP ISPSPTSSSS SSSSTVTTPV SKQTIIEAAS 300 AIYEGKTDVY PEILSRICQV ANPQGNSEQR LMEYMLMALK SRVNSAEKTP SVRELYSKEH 360 VDATQSLYDL SPCFKLGFMA ANLAIIEATR EQGREMNSCS NGFHVVDFDI GQGGQYMNLL 420 HALSGLQNLK PAIVKITAVA ADSNGGEEEE RLRRVGEMLS QLAQRLGLSL CFNVVSCRLS 480 ELSRESLGCE PEETLAVNFA FKLYRMPDES VSTENPRDEL LRRVKGLGPR VVTIVEQEMN 540 TNTAPFMARV NESCSYYGAL FDSIDSTMER DSSQRARVEE GLGRTLVNSV ACEGRDRIER 600 CEVFGKWRAR MGMAGFELKP MSQIVAESMK ARLNLTNRVN PGFTVKEENG GVCFGWKGKT 660 LTVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-39 | 314 | 668 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038364.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 0.0 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A2K2ARG5 | 0.0 | A0A2K2ARG5_POPTR; GRAS family protein | ||||
STRING | POPTR_0017s01730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6266 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-150 | SCARECROW-like 8 |