PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030097.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 668aa    MW: 73415.5 Da    PI: 5.8272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030097.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.9e-1092926682374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++++e+A a+ +g++    ++L+r+ + a+p+g++ qRl  y++ AL++r+++      k+ +++e     s+e++ a++ ++++sP++k+++++aN
  CCG030097.1 292 KQTIIEAASAIYEGKTDVYPEILSRICQVANPQGNSEQRLMEYMLMALKSRVNS----AEKTPSVRELY---SKEHVDATQSLYDLSPCFKLGFMAAN 382
                  57899************************************************9....44444555554...99999********************* PP

         GRAS 100 qaIleavege....erv.....HiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                   aI ea+ ++    +       H++Dfdi+qG+Q+++Ll+aL+  ++ +p+ ++iT+v++ ++g  ++e+l+++ge L+++A++lg+++ fnv v+ r
  CCG030097.1 383 LAIIEATREQgremN-ScsngfHVVDFDIGQGGQYMNLLHALSgLQNLKPAIVKITAVAADSNGgeEEERLRRVGEMLSQLAQRLGLSLCFNV-VSCR 478
                  *******99975541.045556*********************66667888*********9999999*************************9.799* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                  l++l+ e+L ++p+E+laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e+++yy alfds+++++ r+s++r+
  CCG030097.1 479 LSELSRESLGCEPEETLAVNFAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTIVEQEMNTNTAPFMARVNESCSYYGALFDSIDSTMERDSSQRA 576
                  ************************************************************************************************** PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   vE+  lgr +vn vaceg++r+er+e ++kWr+r+++aGF+  p+s+ +a+++k+ l+ ++  + g++v+ee+g +++gWk+++L+++SaWr
  CCG030097.1 577 RVEEG-LGRTLVNSVACEGRDRIERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLNLTNrvNPGFTVKEENGGVCFGWKGKTLTVASAWR 668
                  *****.****************************************************999987889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.772265646IPR005202Transcription factor GRAS
PfamPF035143.1E-106292668IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MASGFSSGGG GGGGGGGGGG FQDFYTNRSS LPTMNLSNNP SSLPPYRTNQ IFLDQNLSSH  60
NYQQIAQHRA ILPTSMNATT AATTATPTLI GKRSLADFQS PPQQNLLNQA ALNNLLLRSV  120
KPRINNNLFQ QNTSPISTLS PIDFSVNNLS PQLPNLMPQR YSLPLLQQLR SHQQQQRPMN  180
LMSSNGVINN NNNNMMPYVN MLQNQNGGGN GVVMGQDREK KMLNQLQELE KQLLDDDDDN  240
QEGDDASVIT NTNSEWSETI QNLMSSCNNP ISPSPTSSSS SSSSTVTTPV SKQTIIEAAS  300
AIYEGKTDVY PEILSRICQV ANPQGNSEQR LMEYMLMALK SRVNSAEKTP SVRELYSKEH  360
VDATQSLYDL SPCFKLGFMA ANLAIIEATR EQGREMNSCS NGFHVVDFDI GQGGQYMNLL  420
HALSGLQNLK PAIVKITAVA ADSNGGEEEE RLRRVGEMLS QLAQRLGLSL CFNVVSCRLS  480
ELSRESLGCE PEETLAVNFA FKLYRMPDES VSTENPRDEL LRRVKGLGPR VVTIVEQEMN  540
TNTAPFMARV NESCSYYGAL FDSIDSTMER DSSQRARVEE GLGRTLVNSV ACEGRDRIER  600
CEVFGKWRAR MGMAGFELKP MSQIVAESMK ARLNLTNRVN PGFTVKEENG GVCFGWKGKT  660
LTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3931466826375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038364.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2K2ARG50.0A0A2K2ARG5_POPTR; GRAS family protein
STRINGPOPTR_0017s01730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-150SCARECROW-like 8