PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029930.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 237aa MW: 27111.1 Da PI: 9.5949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029930.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	43	86	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++E +RR ++N+ + +Lr l+ ++ s+K + a++ + A++Y+ +L CCG029930.1 43 AIELQRRGQLNENYKTLRNLIKNP----STKEDRATVIRDAIKYVIQL 86 7999***************999....9*************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.16	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-10	40	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	43	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	43	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.85E-6	43	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MIKQLRQQIK PSMEELPGLE LGMTSCTDVI QEQQGTASLI SFAIELQRRG QLNENYKTLR 60 NLIKNPSTKE DRATVIRDAI KYVIQLIRTV YELKQLVEKN RIKKLDTIGG VDVFTPVVRE 120 SQYSHSYNDS SIGPSFSKKH SWVQRKSKDT EIDVRLIGDE VTIKVLHRRK KNNYCLLFVS 180 RVLDELQMDL HFVSSCYIGY ETNYFQFKTK INGGSSSANA HTVASKLIEV LDSSCSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041996.1	1e-176	PREDICTED: transcription factor bHLH89-like
TrEMBL	B9HPR8	1e-154	B9HPR8_POPTR; Uncharacterized protein
STRING	POPTR_0009s02870.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39679	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	5e-37	bHLH family protein