PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029816.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 473aa    MW: 53318.4 Da    PI: 6.6137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029816.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.73.5e-140454681374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v+ g+ e+a+  L+++s+laspdgd+mqR+aayft ALa r+++ +++l kal+p++ s    see+ +++lf+e++P+lk+s++++
  CCG029816.1  45 LIHLLLACANHVAVGSVENANISLEHISHLASPDGDTMQRIAAYFTAALADRILKGWPGLHKALNPKQVS--LISEEILVQRLFFELCPFLKLSYVIT 140
                  689*****************************************************************98..79************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+aI ea+ege++vHiiD++ s+++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++++le+l+l +Lrv
  CCG029816.1 141 NEAIIEAMEGEKMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHE----KKEVLEQMALRLTEEAEKLDIPFQFNP-IVSKLENLDLGNLRV 233
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll.........................................................desvsleserdevLklvkslsPk 237
                  k+gEalaV++vlqlh ll                                                           s+s + +  ++L++++slsPk
  CCG029816.1 234 KTGEALAVSSVLQLHALLamddemhkrnspsgsknpssshfqrvlrmnqnrhtlgewletdlvnvyssspdsalsPLSLSASPKMGSFLNALRSLSPK 331
                  **********************************************************************99977333444446777*********** PP

         GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                  ++v++eqe++hn+ s++er+++al++y+alfd+le++++r+s er+kvE++l+g+ei+n++aceg+er+erhe+lekW  rle aGF+++pls++   
  CCG029816.1 332 LMVITEQESNHNGLSLMERVTKALNFYAALFDCLESTVSRASLERHKVEKMLFGEEIKNIIACEGTERKERHEKLEKWILRLELAGFGSIPLSYHGRL 429
                  ************************************************************************************************** PP

         GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ll+ ++ dgy+++ee+g+l+++W+drpL+svSaWr
  CCG029816.1 430 QANRLLQSFGYDGYKIKEENGCLLICWQDRPLFSVSAWR 468
                  **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.47119448IPR005202Transcription factor GRAS
PfamPF035141.2E-13745468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MVQEEGSSSV TSPYQFFPWM PLPPGIGSPY PWLRELKSEE RGLCLIHLLL ACANHVAVGS  60
VENANISLEH ISHLASPDGD TMQRIAAYFT AALADRILKG WPGLHKALNP KQVSLISEEI  120
LVQRLFFELC PFLKLSYVIT NEAIIEAMEG EKMVHIIDLN SSEPAQWINL LQTLSARPEG  180
PPHLRITGIH EKKEVLEQMA LRLTEEAEKL DIPFQFNPIV SKLENLDLGN LRVKTGEALA  240
VSSVLQLHAL LAMDDEMHKR NSPSGSKNPS SSHFQRVLRM NQNRHTLGEW LETDLVNVYS  300
SSPDSALSPL SLSASPKMGS FLNALRSLSP KLMVITEQES NHNGLSLMER VTKALNFYAA  360
LFDCLESTVS RASLERHKVE KMLFGEEIKN IIACEGTERK ERHEKLEKWI LRLELAGFGS  420
IPLSYHGRLQ ANRLLQSFGY DGYKIKEENG CLLICWQDRP LFSVSAWRFR RCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-67334707381Protein SCARECROW
5b3h_A3e-67284701380Protein SCARECROW
5b3h_D3e-67284701380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042138.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_011042139.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3N7EUY90.0A0A3N7EUY9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]