PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029773.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 422aa    MW: 46936 Da    PI: 8.302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029773.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12350395655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  CCG029773.1 350 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 395
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15347407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.12E-12348397No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14349405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9350395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MESDLQHQHH FLHGHNQHQQ IHQKQMNSGL TRYQSAPSSY FSSNLDRDFC EEFLNRPTSP  60
ETERIFARFL ANSGGNTENI PGSNLCEIKQ DSPVKESVSQ INQQPQMMAS MNNHSSDTRL  120
HQHQHQQNQQ GNYSASQGFY QRSAAPTGQL LCLAGSTNLT GLERLPSMKP VSGNNPNLVR  180
HSSSPAGLFS NVNIEFENGY AVLRDMGDLG AGNRDTTYSA AGRPPSSSLV RSTIADMGNK  240
NMGENSPDSG GFGETPGNNY DYPIGSWDDS AVMSTGSKRH LTDDDRTLSG LNSSGTQNEE  300
AGNRPPMLAH HLSLPKTSAE MSTIENFLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI  360
SERMRKLQDL VPNMDKQTNT SDMLDLAVDY IKDLQRQFKA LSENRARCTC LKKQQPKLKN  420
PK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164090.0AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042060.10.0PREDICTED: transcription factor bHLH122-like isoform X4
TrEMBLA0A2K2BA980.0A0A2K2BA98_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-69bHLH family protein