PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029708.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 313aa    MW: 34896.1 Da    PI: 8.2627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029708.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18107157256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  CCG029708.1 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAFAYDRAAYKLRGE 157
                  59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-22106166No hitNo description
PROSITE profilePS5103223.143107164IPR001471AP2/ERF domain
SMARTSM003801.0E-35107170IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-31107165IPR001471AP2/ERF domain
PfamPF008472.9E-12108157IPR001471AP2/ERF domain
PRINTSPR003674.4E-10108119IPR001471AP2/ERF domain
PRINTSPR003674.4E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERMQENNFS FAFNNTIDIG SSLSQLILAG GTNTLDSVFS YCQAASTLTT PAFEPLGSSV  60
YLHQRDLLQK FSEENRTNTS FSHNWLANPL QNPVHTRNYL APTKKKLYRG VRQRHWGKWV  120
AEIRLPQNRM RVWLGTYDTA EAAAFAYDRA AYKLRGEYAR LNFPNLKDPT ELGFKDCTRL  180
DVLKSTVDAK IQAICQKVKK ERAKKNAGNK STVDGKSTES QKPVKVDSNS STPSPSSSSS  240
QPPPPFLSGN NWGCSELVSP SVSEEGLWKC ESSSPSLSTD CTVMVPQDSE FEGCSLARMP  300
SYDPELIWEV LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20104164263ATERF1
3gcc_A1e-20104164263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026904.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2K2BUX40.0A0A2K2BUX4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13910.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-61ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]