PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029627.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 190aa    MW: 22200.5 Da    PI: 7.6078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029627.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-201769456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ft+eq++ Le +Fe+++ p  + +++LA++lgL+ rqV +WFqNrRa+ k
  CCG029627.1 17 KRRFTDEQIKFLEFMFESESRPESRVKQQLASELGLEPRQVAIWFQNRRARLK 69
                 468************************************************98 PP
2HD-ZIP_I/II112.52.8e-3617107393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  krr+++eq+k+LE +Fe+e++ e++ K++la+eLgl+prqva+WFqnrRAR ktkq+Ek+y+ Lk++yd l+++ e+L++e+++L  +l++
  CCG029627.1  17 KRRFTDEQIKFLEFMFESESRPESRVKQQLASELGLEPRQVAIWFQNRRARLKTKQIEKEYSILKASYDVLASSFESLKREKQSLIIQLQK 107
                  9************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-19873IPR009057Homeodomain-like
PROSITE profilePS5007117.4591171IPR001356Homeobox domain
SMARTSM003891.2E-151375IPR001356Homeobox domain
CDDcd000868.89E-141772No hitNo description
PfamPF000461.6E-171769IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-191878IPR009057Homeodomain-like
PRINTSPR000311.0E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000311.0E-55167IPR000047Helix-turn-helix motif
PfamPF021831.6E-1671111IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDPGTHPLSS IQKNAYKRRF TDEQIKFLEF MFESESRPES RVKQQLASEL GLEPRQVAIW  60
FQNRRARLKT KQIEKEYSIL KASYDVLASS FESLKREKQS LIIQLQKLKN RQHGSRNCEN  120
QLGSSRGGRF ENKDTGSESK DKPSSPLDGN ENEENRPSSD NNSVNMREEI DILNHTEQTD  180
NSSQWWEFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371RRARLKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328150.0CU232815.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026784.11e-138PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLB9GK741e-127B9GK74_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11380.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-39homeobox 7