PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31839.7 Da PI: 8.1785 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 128 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka++ a+ +l+g CCG029593.1 128 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 178 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 127 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 128 | 187 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-14 | 128 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-31 | 128 | 186 | No hit | No description |
PROSITE profile | PS51032 | 24.645 | 128 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 128 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 168 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MASFDEASTL ELIRQHLLTD FASMDSFISN LDDLCSTSTT STTDDYYIKT ESTEFDPFDQ 60 PQFNLQTKSS IEFKPQYSSP KSSTSLSQRK PSEIKDIAIP PPAPLNMNPQ VAQPVVNKTD 120 LSSEQDRHYR GVRRRPWGKY AAEIRDPNKK GARVWLGTFD TAIEAAKAYD SAAFRLRGSK 180 AILNFPLEAG KSNSQQPEQF LGTYCKKRKF EGIRSGMEGT NSSTNKVVKR ETSSPESEVK 240 AVASEPLTPS NWKGFWDGET MGIFGVPPLS PLSPHPSFGY SRLMVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 127 | 187 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026728.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Refseq | XP_011026729.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Refseq | XP_011026730.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Refseq | XP_011026731.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | B9GK34 | 1e-174 | B9GK34_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11780.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 7e-59 | ERF family protein |