PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029426.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 763aa    MW: 84631.5 Da    PI: 6.3657
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029426.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-21110165156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  CCG029426.1 110 RKKYHRHTAEQIKEMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165
                  7999************************************************9877 PP
2START233.75.1e-732775021206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  e+a++a++el k+a+a+ep+Wv+s+    e++n+de++++f ++++       +s+ea+r+++vv+ +l++lv++++d++ +W+e+++    ka+t++
  CCG029426.1 277 EIANQAMEELKKMATAGEPLWVRSVetgrEILNYDEYTKEFGSENSsnngrpkRSIEASRETRVVFVDLPRLVQSFMDVN-RWKEMFPclisKAATVD 373
                  57899************************************8887799********************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                  vi++g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvSvd  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++
  CCG029426.1 374 VICNGeganrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSVDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQK 470
                  ***********************************************************98.9*********************************** PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  +++h ++r +v+sgla+ga++w+atlq qce+
  CCG029426.1 471 STVHTMFRTVVHSGLAFGARHWMATLQLQCER 502
                  ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-2489165IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2197168IPR009057Homeodomain-like
PROSITE profilePS5007118.204107167IPR001356Homeobox domain
SMARTSM003891.1E-18109171IPR001356Homeobox domain
PfamPF000469.7E-19110165IPR001356Homeobox domain
CDDcd000869.01E-17114165No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084840.065268505IPR002913START domain
SuperFamilySSF559614.94E-33270502No hitNo description
CDDcd088758.73E-110272501No hitNo description
Gene3DG3DSA:3.30.530.206.6E-6276497IPR023393START-like domain
PfamPF018521.7E-58277502IPR002913START domain
SMARTSM002346.5E-76277502IPR002913START domain
SuperFamilySSF559612.47E-13532749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVSHSAA AGSVEVEEGD EGSGGGRREE  60
TVEISSETSG PMRSRSDDDL EGEGEHDEDD GDGDGDGDGD DDNKNKKKKR KKYHRHTAEQ  120
IKEMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKAIQER HENSLLKTEM  180
DKLREENKTM RETINKACCP NCGTATTSRG TALTTEEQQL RIENAKLKAE VEKLRAVIGK  240
YSPGATASCS AANDQENRSS LDFYTGIFGL DKTRITEIAN QAMEELKKMA TAGEPLWVRS  300
VETGREILNY DEYTKEFGSE NSSNNGRPKR SIEASRETRV VFVDLPRLVQ SFMDVNRWKE  360
MFPCLISKAA TVDVICNGEG ANRNGAVQLM FAEVQMLTPM VPTREVYFVR YCKQLNAEQW  420
AIVDVSVDKV EDNIDASLVK CRKRPSGCII EDKSNGHCKV IWVEHLECQK STVHTMFRTV  480
VHSGLAFGAR HWMATLQLQC ERLVFFMATN VPTKDSTGVA TLAGRKSILK LAQRMTWSFC  540
RALGASSYHI WSKVSSKTGE DIRISSRKNL NDPGEPVGLI LCAVSSVWLP VPPHILFDFL  600
RDESRRNEWD IMSNGGPVQA TANLAKGQDR GNAVTILKMK SKENNMWVLQ DSGTNAYESM  660
VIYAPVDTNG MQSVINGCDS SNLAILPSGF SILPDGHESR PLVITSRQEE KSTEGGSLLT  720
IAFQILTNTS PTAKLTMESV DSVNALISCT LKNIKTSLQC EDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KKKKRK
2105111KKKKRKK
3107111KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010522.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2I4KKD40.0A0A2I4KKD4_POPTR; HD-ZIP family protein
TrEMBLB9GXB60.0B9GXB6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]