PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029417.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33923.5 Da PI: 5.3106 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00044 | 193 | 231 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq CCG029417.2 193 RKEKLGDRITALHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 231 6677888999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.363 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-7 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-10 | 191 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-5 | 191 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAGNPSWWSM HPPSQQPSAL LSSSPSTFPS QFVLGSSPFP LNSLPDNQEL PQSWSQLLLG 60 GSSGYEDRYG LSQFQPKKLE NWEDQILNPS PSISLDADVK QEVSHNSNLY GHGEEDFQAA 120 RPTAWPQAMP VSSPRSCVTS LSSSTSILDF SYNKADGASQ HPDQSSECNS TATGGVCKKA 180 RVQPSSSQPL KVRKEKLGDR ITALHQMVSP FGKTDTASVL LEAIGYIRFL QGQIEALSSP 240 YMGTASPNMR NQQQSVQEER NCAFSEDMHQ DNQNQPKDLR SRGLCLVPVS CTQHVGSDNG 300 ADYWAPAIGG GF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010531.1 | 0.0 | PREDICTED: transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 3e-65 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2K2B1T0 | 0.0 | A0A2K2B1T0_POPTR; BHLH family protein | ||||
STRING | POPTR_0001s18660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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