PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 459aa MW: 49890.1 Da PI: 8.7285 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.3 | 9.8e-19 | 80 | 163 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L+ea++e+ ++l+rg+l++ +Weev+++++erg ++s +qCk+k++nl+kryk + ++ ++ s s++ +f+++e CCG029172.1 80 EWSDSAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEVVSERGGsnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 163 5*************************************777654577*****************98888776..3..456*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-23 | 78 | 165 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 5.4E-71 | 218 | 452 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.577 | 221 | 453 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 3.93E-56 | 222 | 452 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 9.06E-114 | 224 | 453 | No hit | No description |
Pfam | PF00696 | 4.8E-24 | 225 | 432 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MANDDFPLIG EPPPHPPTRH PYSTSVTTTG DYYYSDHDKS AATPSSKRNQ QNHYYYNNKR 60 LKSNSITKIE SCDYRKDREE WSDSAISCLL EAYTEKYNQL NRGNLRGRDW EEVAEVVSER 120 GGSNKKSVEQ CKNKIDNLKK RYKVELQRIS GSGSSWHWFK HIEAIMGNAC NGKSGGSGES 180 DGGGGGGSGG NVNAVVKQVK RYTSGSAAFA NSLKTKPVPN SKWRRVVFKI SGSALAGNCQ 240 NIDPKVAMQI AREVATASRG GLEIAIVLGG RNFFCGDSWI SATGLERPTA YQISMMATVM 300 NSILLQSALE KHGVQARVQS PFAMPELAEP YSRQRAIRHL EKGRVVIFGG AGAGNPLFTT 360 DTAAALRASE INADALLKGT NVDGVYDHHA GNSNAILDHI SFREVVSRGV TLVDMMAMTC 420 CEENGIPVVI FNLLEPGNIS RAFCGDQVGT LIDQAGRIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3nwy_A | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
3nwy_B | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
3nwy_C | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
3nwy_D | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
3nwy_E | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
3nwy_F | 8e-66 | 221 | 452 | 48 | 279 | Uridylate kinase |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010401.1 | 0.0 | PREDICTED: uncharacterized protein LOC105115258 | ||||
Swissprot | Q3AV98 | 1e-72 | PYRH_SYNS9; Uridylate kinase | ||||
Swissprot | Q7U5F5 | 1e-72 | PYRH_SYNPX; Uridylate kinase | ||||
TrEMBL | A0A1I9W0C8 | 0.0 | A0A1I9W0C8_POPTO; Aspartate/glutamate/uridylate kinase family protein | ||||
STRING | POPTR_0008s02730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-161 | Trihelix family protein |