PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028920.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 634aa MW: 72284.4 Da PI: 5.4445

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028920.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	179.2	2.9e-55	8	359	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 L+ cA+a++ g+l+ a++lLa+++ las++ ++++++yf+eAL +r ++ pp + l+a ++ P++ f+ +t + CCG028920.1 8 KLVVCAKAIEGGSLNVADSLLAEIQSLASKEEsIWTRKVVKYFAEALVRRAYGIR-------PPCIFP------LLSAACM---YVPFYAFARITSKH 89 6999**********************9999568999***********22.......333333......3444444...47******** PP GRAS 101 aIleave.geervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aI +a++ g++r+HiiDf+ + W L+++L + +g s+ i ++++ s+ ++ e + L Ae +v+++ + + CCG028920.1 90 AIADALNsGNKRLHIIDFSnFGDYWRWRYLIKELEQHYGGLQSVLISSISPKLSKhschprfHRGWAEGGNVELWGWAEGGNVELRHLI-CNIPYGIV 186 *97256****73678899********************98766788887555555556668999999999877.44466666 PP GRAS 190 e.leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 + ++eLr k+ +E ++Vn+ + lh+ll++++++e+ vL+ vk+l ++++v+veqea++ns+ + er+ ++++yys++f+sle+ + + + CCG028920.1 187 NcISELRRKReDEIVVVNWNFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPCLSERLEQSFQYYSTIFESLEEDY-----GSNAL 275 53799999988********************....*****************************************9996.....34455 PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++r+i nvvaceg +r+er e++++W++rl++aGF pvp + +++ + l+++k ++ +ee++g +l ++ p+ ++S+W+ CCG028920.1 276 WEMYFRRQIGNVVACEGVDRVERIESFAHWQNRLSQAGFCPVPQQ---VDKLEEDLSNFK--EFGIEEKEGHTLLLRHGFPVAVASVWK 359 5678**********************************954...445555566666..799*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.835	1	344	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-52	8	359	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MAYLLLYKLV VCAKAIEGGS LNVADSLLAE IQSLASKEES IWTRKVVKYF AEALVRRAYG 60 IRPPCIFPLL SAACMYVPFY AFARITSKHA IADALNSGNK RLHIIDFSNF GDYWRWRYLI 120 KELEQHYGGL QSVLISSISP KLSKHSCHPR FHRGWAEGGN VELWGWAEGG NVELRHLICN 180 IPYGIVNCIS ELRRKREDEI VVVNWNFTLH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE 240 ANLNSPCLSE RLEQSFQYYS TIFESLEEDY GSNALWEMYF RRQIGNVVAC EGVDRVERIE 300 SFAHWQNRLS QAGFCPVPQQ VDKLEEDLSN FKEFGIEEKE GHTLLLRHGF PVAVASVWKV 360 TDPPQFSGGY WKNMLTGLYT MQDRVDDSEG MASSSESEDD EENDSLAFIM ADRNLWSTQG 420 SSINRIAASA KLYDILEYIC DLHELPLAVT WVSYGQDGNT NSKGKRVLCI DDSACYVNDW 480 LMDGFVEEYA QHRLEEGKGI AGKALQSNIH IQHDISVLNP AEFPCDDCGT ISRWIRKNYA 540 AFAIRLTSTH PCKDDYVLEF LLPELMKETS ERELLINKVL RTLQRKCLKL WKLGVRDINE 600 ARLNATSIEA EETRELLEQI SFRRLRKGGI IIVQ

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MAYLLLYKLV VCAKAIEGGS LNVADSLLAE IQSLASKEES IWTRKVVKYF AEALVRRAYG  60
IRPPCIFPLL SAACMYVPFY AFARITSKHA IADALNSGNK RLHIIDFSNF GDYWRWRYLI  120
KELEQHYGGL QSVLISSISP KLSKHSCHPR FHRGWAEGGN VELWGWAEGG NVELRHLICN  180
IPYGIVNCIS ELRRKREDEI VVVNWNFTLH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE  240
ANLNSPCLSE RLEQSFQYYS TIFESLEEDY GSNALWEMYF RRQIGNVVAC EGVDRVERIE  300
SFAHWQNRLS QAGFCPVPQQ VDKLEEDLSN FKEFGIEEKE GHTLLLRHGF PVAVASVWKV  360
TDPPQFSGGY WKNMLTGLYT MQDRVDDSEG MASSSESEDD EENDSLAFIM ADRNLWSTQG  420
SSINRIAASA KLYDILEYIC DLHELPLAVT WVSYGQDGNT NSKGKRVLCI DDSACYVNDW  480
LMDGFVEEYA QHRLEEGKGI AGKALQSNIH IQHDISVLNP AEFPCDDCGT ISRWIRKNYA  540
AFAIRLTSTH PCKDDYVLEF LLPELMKETS ERELLINKVL RTLQRKCLKL WKLGVRDINE  600
ARLNATSIEA EETRELLEQI SFRRLRKGGI IIVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-12	12	314	26	329	Protein SCARECROW
5b3h_A	5e-12	12	314	25	328	Protein SCARECROW
5b3h_D	5e-12	12	314	25	328	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213918	0.0	AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041335.1	0.0	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBL	A0A3N7G5D1	0.0	A0A3N7G5D1_POPTR; Uncharacterized protein
TrEMBL	A0A3N7H1S7	0.0	A0A3N7H1S7_POPTR; Uncharacterized protein
STRING	POPTR_0016s02700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20622	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-53	GRAS family protein