PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028919.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 280aa    MW: 31869.6 Da    PI: 6.7047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028919.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.54.9e-3882734278
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   L+ cA+a++ g+l+ a++lLa+++ las++    ++++++yf+eAL +r ++         pp   +       l+a ++     P++ f+ +t  +
  CCG028919.1   8 KLVVCAKAIEGGSLNVADSLLAEIQSLASKEEsIWTRKVVKYFAEALVRRAYGIR-------PPCIFP------LLSAACM---YVPFYAFARITSKH 89 
                  6999************************9999568999***************22.......333333......3444444...47************ PP

         GRAS 101 aIleave.geervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                  aI +a++ g++r+HiiDf+  +    W  L+++L +  +g  s+ i  ++++ s+       ++   e  +  L   Ae  +v+++  +        +
  CCG028919.1  90 AIADALNsGNKRLHIIDFSnFGDYWRWRYLIKELEQHYGGLQSVLISSISPKLSKhschprfHRGWAEGGNVELWGWAEGGNVELRHLI-CNIPYGIV 186
                  *****97256********73678899************************98766788887555555556668999****999999877.44466666 PP

         GRAS 190 e.leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                  + ++eLr k+ +E ++Vn+ + lh+ll++++++e+    vL+ vk+l ++++v+veqea++ns+ + er+ ++++yys++f+sle+ ++++
  CCG028919.1 187 NcISELRRKReDEIVVVNWNFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPCLSERLEQSFQYYSTIFESLEEDYGSN 273
                  53799999988************************....*********************************************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.5941280IPR005202Transcription factor GRAS
PfamPF035141.7E-358273IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAYLLLYKLV VCAKAIEGGS LNVADSLLAE IQSLASKEES IWTRKVVKYF AEALVRRAYG  60
IRPPCIFPLL SAACMYVPFY AFARITSKHA IADALNSGNK RLHIIDFSNF GDYWRWRYLI  120
KELEQHYGGL QSVLISSISP KLSKHSCHPR FHRGWAEGGN VELWGWAEGG NVELRHLICN  180
IPYGIVNCIS ELRRKREDEI VVVNWNFTLH KLLAQDGAME QVLSKVKDLG ADIMVIVEQE  240
ANLNSPCLSE RLEQSFQYYS TIFESLEEDY GSNALWDCLN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139181e-128AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041408.10.0PREDICTED: DELLA protein GAIP-like
TrEMBLA0A3N7G3321e-127A0A3N7G332_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02720.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2062225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-38GRAS family protein