PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028798.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 917aa MW: 101357 Da PI: 6.4055

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028798.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	610	661	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ CCG028798.1 610 AEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 661 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	600	681	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-25	613	661	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.01E-22	821	913	No hit	No description
PROSITE profile	PS51745	25.401	831	914	IPR000270	PB1 domain
SMART	SM00666	5.1E-24	831	914	IPR000270	PB1 domain
CDD	cd06407	2.64E-35	832	911	No hit	No description
Pfam	PF00564	4.9E-18	832	913	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.4E-23	832	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MMEDGVLSPG MMLGAAVDSA MDFDYMDELL VEGCWLETTD GSEFLNPSLS NSAALFDPSF 60 MWPSPEMKYG NPASILSQMG SQEVSHLTLL PGNSPLSDIQ SRSPVGEIAV SAAGWEYNAT 120 EGSELGKRWW IGPAPNPSPG TTVKRRLIKA VECIKDLTKN KDVLIQIWVP VNRGGRRVLT 180 THDQPFAFDP SSERLASYRD ISVKYQFSAE EDSKDSFGMP GRVFLGKVPE WTPDVRFFRN 240 DEYPRVNHAQ QCDVRGTLAL PVFEQGSRTC LGVIEVVTTS QKIKYLPELE SVCKALEAVD 300 LRSSEVPSIQ NQKACDMSYQ AALPEIQKVL RAACETHRLP LAQTWVPCIQ QGKGGCRHSN 360 ENYYHCVSTV DDACCVGDPA FQGFLEACSE HHLLKGQGVV GKAFMTNQPC FSGDVTLYGK 420 TEYPLSHHAR IFGLCAAVAI RLRSMYTGTA DFVLEFFLPV DCRDPQEQKT MLTSLSIIIQ 480 RVCQTLRVVT VKELEEETDL PVSEVLVPSD GRSSGEETLT VKESYSERHA RDNSPWTACV 540 QKVLQSGSNA SLSEKDKEKV MCEKSIESRH NQEDYSLSGS TKYGGDSTSA EGSFSSVCKT 600 KPGEKRRAKA EKTITLQVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI NRWPSRKIKK 660 VGHSLQKLQR VIDSVEGAPG SVQIGSFYKN FPELASPNSS RNSPLSTLNP SSHPKPSGMQ 720 LEGGTFSSHV AEPKSPSPSC SLSSSSSHSY SSTTQQHPSA ITVAASEDPK LGENLGSGVL 780 KKIRSNAELH ASILEERKLM PRSQSHTTLT ELGNRPPLPK DSSRLSQEMD GHRVKVSFGN 840 ERIRLRMPSN WVFKDLLQEI IRRFNLDDMH RYDLKYMDDD SDWVLLACDD DLEECIDVCG 900 SGDNQTIKLL LEVSPHP

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MMEDGVLSPG MMLGAAVDSA MDFDYMDELL VEGCWLETTD GSEFLNPSLS NSAALFDPSF  60
MWPSPEMKYG NPASILSQMG SQEVSHLTLL PGNSPLSDIQ SRSPVGEIAV SAAGWEYNAT  120
EGSELGKRWW IGPAPNPSPG TTVKRRLIKA VECIKDLTKN KDVLIQIWVP VNRGGRRVLT  180
THDQPFAFDP SSERLASYRD ISVKYQFSAE EDSKDSFGMP GRVFLGKVPE WTPDVRFFRN  240
DEYPRVNHAQ QCDVRGTLAL PVFEQGSRTC LGVIEVVTTS QKIKYLPELE SVCKALEAVD  300
LRSSEVPSIQ NQKACDMSYQ AALPEIQKVL RAACETHRLP LAQTWVPCIQ QGKGGCRHSN  360
ENYYHCVSTV DDACCVGDPA FQGFLEACSE HHLLKGQGVV GKAFMTNQPC FSGDVTLYGK  420
TEYPLSHHAR IFGLCAAVAI RLRSMYTGTA DFVLEFFLPV DCRDPQEQKT MLTSLSIIIQ  480
RVCQTLRVVT VKELEEETDL PVSEVLVPSD GRSSGEETLT VKESYSERHA RDNSPWTACV  540
QKVLQSGSNA SLSEKDKEKV MCEKSIESRH NQEDYSLSGS TKYGGDSTSA EGSFSSVCKT  600
KPGEKRRAKA EKTITLQVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI NRWPSRKIKK  660
VGHSLQKLQR VIDSVEGAPG SVQIGSFYKN FPELASPNSS RNSPLSTLNP SSHPKPSGMQ  720
LEGGTFSSHV AEPKSPSPSC SLSSSSSHSY SSTTQQHPSA ITVAASEDPK LGENLGSGVL  780
KKIRSNAELH ASILEERKLM PRSQSHTTLT ELGNRPPLPK DSSRLSQEMD GHRVKVSFGN  840
ERIRLRMPSN WVFKDLLQEI IRRFNLDDMH RYDLKYMDDD SDWVLLACDD DLEECIDVCG  900
SGDNQTIKLL LEVSPHP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041223.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_011041224.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A2K2AMD3	0.0	A0A2K2AMD3_POPTR; Uncharacterized protein
TrEMBL	A0A385JI31	0.0	A0A385JI31_POPTO; NIN-like protein 1
STRING	POPTR_0005s27310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein