PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028724.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13519.9 Da    PI: 10.8394
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028724.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1611941092
                 HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                 + +s+ l++pkk++++     g      ++ +  desg +W++++++rkk+    vl+kGW+ Fv+ ++Lk+gD + F+l++ + +++
  CCG028724.1 11 TDTSKTLSVPKKYLKSLpsfkG---GHAVEFQAIDESGFVWTFQCSIRKKGHPkPVLSKGWRAFVRNKKLKVGDKIKFSLNQ-TAATP 94
                 4556679*******99997643...35678999************886665546*************************987.44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.5742101IPR003340B3 DNA binding domain
SuperFamilySSF1019366.41E-16395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-18396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-19494No hitNo description
SMARTSM010191.1E-104101IPR003340B3 DNA binding domain
PfamPF023621.0E-131295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MTTFSKILGK TDTSKTLSVP KKYLKSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGHP  60
KPVLSKGWRA FVRNKKLKVG DKIKFSLNQT AATPFYTVQA EKEVKIFGAI FGYSPIIATF  120
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RKKGHPKPVLSKGWRAFVRNKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010225.11e-83PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DYN22e-76U7DYN2_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00220.13e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.15e-09auxin response factor 22