PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14044.5 Da PI: 10.7305 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.6e-14 | 13 | 90 | 11 | 87 |
HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++rl+lp k++++ + +++ desg +W++k++ rkk+ vl+kGW Fv+ ++Lk+gD v F +++ CCG028723.1 13 I-QKRLSLPTKCFKSLpslK--GSHGRDFPAIDESGFVWTFKCSTRKKGHPkPVLSKGWLAFVRHKELKVGDRVKFLKEKD 90 3.346********9999554..4467789999***********765554447************************85544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.543 | 2 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0036 | 4 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 4 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-14 | 5 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-16 | 5 | 92 | No hit | No description |
Pfam | PF02362 | 2.0E-10 | 12 | 90 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAEVTKLLTK TDIQKRLSLP TKCFKSLPSL KGSHGRDFPA IDESGFVWTF KCSTRKKGHP 60 KPVLSKGWLA FVRHKELKVG DRVKFLKEKD RSGPATPFYR VEAEKEIKIF GAIFGYSLIV 120 SSFP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010224.1 | 9e-86 | PREDICTED: uncharacterized protein LOC105115124 | ||||
TrEMBL | B9I5A0 | 8e-76 | B9I5A0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02040.1 | 1e-76 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |