PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 222aa MW: 24703.4 Da PI: 9.7053 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.7 | 1.4e-28 | 19 | 73 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++Y+eC +NhA +Gg avDGCgEf+p+ g++gt++al C ACgCHRnFHR++ ++ CCG028612.1 19 IEYRECWRNHAMLTGGSAVDGCGEFTPK-GDQGTKEALICEACGCHRNFHRKQLTK 73 68*************************9.9999*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.5E-27 | 19 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-15 | 19 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.0E-25 | 20 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.044 | 21 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF48695 | 7.85E-5 | 56 | 126 | IPR011031 | Multihaem cytochrome |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MANADSKSGP LNEESRTIIE YRECWRNHAM LTGGSAVDGC GEFTPKGDQG TKEALICEAC 60 GCHRNFHRKQ LTKNGIIILD THLSPPPCSG CHRNFHRKQL TKNGIIILDT HLSPPPCSGC 120 HRNFHRKQLT KNGIIILDTH LSPPPCRLYG ASMWVEKNAS GFHPLSSLPL TSPSPPCYPR 180 TSVSDQESLV YVPSPSPYLR KSEKKMKARK GPKRGTLMHE RK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439335.1 | 7e-83 | zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A3N7FVC8 | 2e-81 | A0A3N7FVC8_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17111 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 5e-21 | homeobox protein 21 |