PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 170aa MW: 19701.3 Da PI: 8.4686 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q++ Le+ F n+++ e + +LA++lg++ rq+ +W+qN+Ra++k CCG028530.1 20 KKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 73 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 108 | 6.7e-35 | 19 | 110 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+ ++++ ++++rLe+ev +L+eel CCG028530.1 19 NKKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLQVRLENALADRRRLEREVVRLQEELW 110 59**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.856 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-15 | 17 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-17 | 18 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.0E-15 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.29E-14 | 20 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 21 | 82 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDFFHSQTQQ KQQYLPKHNK KKRLTEDQVR LLERTFTTNK KLEPELKVQL ANQLGVPPRQ 60 IAIWYQNKRA RWKTQSLELD YNTLQVRLEN ALADRRRLER EVVRLQEELW QAQQMVFSVN 120 QETAAQPAVN LSCNSSCDDR GSSSLHEGVN GEVLQLEELY ACLYGAGGGV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146937 | 0.0 | EF146937.1 Populus trichocarpa clone WS01225_C08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008450.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Swissprot | Q9FN29 | 1e-42 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A2K2CAW7 | 1e-109 | A0A2K2CAW7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s40540.1 | 1e-110 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-34 | homeobox protein 52 |