PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028467.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1627aa MW: 180626 Da PI: 5.867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028467.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	1512	1537	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C +sF +k +L+ H r+ + CCG028467.1 1512 HKCNleGCRMSFETKTELQLHKRNrC 1537 79********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.9E-14	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.689	16	57	IPR003349	JmjN domain
Pfam	PF02375	1.5E-14	17	50	IPR003349	JmjN domain
SMART	SM00558	6.1E-46	287	456	IPR003347	JmjC domain
SuperFamily	SSF51197	6.04E-26	287	453	No hit	No description
PROSITE profile	PS51184	33.688	290	456	IPR003347	JmjC domain
Pfam	PF02373	1.8E-35	320	439	IPR003347	JmjC domain
SMART	SM00355	10	1512	1534	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.084	1535	1559	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.009	1535	1564	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.86E-6	1535	1572	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-5	1536	1563	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1537	1559	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-9	1564	1589	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0018	1565	1589	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.884	1565	1594	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1567	1589	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.44E-10	1575	1617	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-10	1590	1618	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	2.5	1595	1621	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.596	1595	1626	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1597	1621	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1627 aa Download sequence Send to blast
MGNVEIPEWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV 60 FSNLNKALSK CPELGDDVDL SNGVLRDGGN DGENRAVFTT RQQELGQSAK KAKGVDKENP 120 LSGVHQQVWQ SGEVYTLEQF ESKSKAFARS LLGMIKEVNP LAVEALFWKA ASEKPIYVEY 180 ANDVPGSGFG EPEGHFRYFQ RRRRKRASYQ SYRRSREIPV CRENDIDGVK NSHNNDVTVK 240 NGPSMCLKMT PRSSMASATP SAEDSLKSSK KKSLAASNDM EGTAGWKLSN SPWNLQVIAR 300 SPGSLTRFMP DDIPGVTSPM VYIGMLFSWF AWHVEDHELH SMNFLHIGSP KTWYAVPGDY 360 VFAFEEVIRT KAYGGNIDRL AALSLLGEKT TLLSPEAIIS SGIPCCRLVQ NPGEFVVTFP 420 RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR 480 VPRSLLPGAR SSRLRDRQRE ERELSVKKAF LEDMLKENDV LSAFLEKNST CHVVIWNPDL 540 LPCASKESQL LSITSTITTT SNENASHVHS DLNSNNNEND LFKEMSLYME TLNDLYMEDD 600 LSCDFQVDSG TLACVACGIL GFPFMSVVQP SERAFIELTP GDYLLAQEEP GVTRSDNVQP 660 SPNPDTSVKG SIPDDHAPVI DLSVSLKDLP VPTGWNTSCK FLRPRIFCLE HGVQIEELLQ 720 SKGGANMLII CHSDYQKIKA HAFAIAEEIE NPFNYHEIPL EAASQENLNL INLAIDDEDH 780 HECGEDWTSK LGINLRYCVK IRKNSPSKKV QHALALGGLF SDRSLCSDFL NIKWQSRRSR 840 SRIKLNQPVN CKPCKIMETN KDESLGNKSD GLTDKKEKKL IHYTRRKYKV KIDYSTNGLR 900 RCSRKCLAEE VSGASGDDPD KHAEQTTLIY PCNIGITRSG SAAFGFSPID DSEMLHEVQV 960 LEAASGLTLN SAPSQIAGSI LTATMAVKSV AGQIEDRLLE ESNTERNICN VKASGSCEIE 1020 HEINASGGTS ERQDFCTTKC CSPFDTAANE RFEMQIEDQI MGNVNIMSET CDLVSEGQRR 1080 ILDDDDDASM HEVSDLANSA SLHVSHLPVA QMANVVVENS SINNEVSSPV TLDNEVQREI 1140 KTKSRTNGDQ CSSSDDTLMN RPSTPLDERC DHEQETCAAE NKMQQENEIT NGGHEELVLS 1200 DVISGPNIIP MDESSEFHRE PHAAVNLCNG VAFESGEQLV FLTANDSKKE LTPCSGTQME 1260 INPSTASPEF SKLNRQDSAE NNLCSGSTLG TVVPLEIPTT DISTVEEFAP NSATKNQVLA 1320 EASREICVIP DLYSCMDLEH EVEQEIQSND VVIGDSVAQK MHESSSSINE DRPVSTCVIL 1380 VNQPTPSPVK KCCDIECKSC GGESVVKCNE VCSSQEIESI ESSLVDFRSN AGKGRKRKSE 1440 VEQPTENKLN SNGFIRSPCE GLRPRAGKDA ICKSEVDDGK SAEENPVTKR SRKPSDASVP 1500 CPKRKEITKR SHKCNLEGCR MSFETKTELQ LHKRNRCTYD GCGKKFRSHK YAIVHQRVHE 1560 DDRPLKCPWK GCSMSFKWAW ARIEHIRVHT GEKPYLCKVE GCGLSFRFVS DFSRHRRKTG 1620 HYSNTPA

Sequence ? help Back to Top

Protein Sequence Length: 1627 aa Download sequence Send to blast

MGNVEIPEWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
FSNLNKALSK CPELGDDVDL SNGVLRDGGN DGENRAVFTT RQQELGQSAK KAKGVDKENP  120
LSGVHQQVWQ SGEVYTLEQF ESKSKAFARS LLGMIKEVNP LAVEALFWKA ASEKPIYVEY  180
ANDVPGSGFG EPEGHFRYFQ RRRRKRASYQ SYRRSREIPV CRENDIDGVK NSHNNDVTVK  240
NGPSMCLKMT PRSSMASATP SAEDSLKSSK KKSLAASNDM EGTAGWKLSN SPWNLQVIAR  300
SPGSLTRFMP DDIPGVTSPM VYIGMLFSWF AWHVEDHELH SMNFLHIGSP KTWYAVPGDY  360
VFAFEEVIRT KAYGGNIDRL AALSLLGEKT TLLSPEAIIS SGIPCCRLVQ NPGEFVVTFP  420
RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR  480
VPRSLLPGAR SSRLRDRQRE ERELSVKKAF LEDMLKENDV LSAFLEKNST CHVVIWNPDL  540
LPCASKESQL LSITSTITTT SNENASHVHS DLNSNNNEND LFKEMSLYME TLNDLYMEDD  600
LSCDFQVDSG TLACVACGIL GFPFMSVVQP SERAFIELTP GDYLLAQEEP GVTRSDNVQP  660
SPNPDTSVKG SIPDDHAPVI DLSVSLKDLP VPTGWNTSCK FLRPRIFCLE HGVQIEELLQ  720
SKGGANMLII CHSDYQKIKA HAFAIAEEIE NPFNYHEIPL EAASQENLNL INLAIDDEDH  780
HECGEDWTSK LGINLRYCVK IRKNSPSKKV QHALALGGLF SDRSLCSDFL NIKWQSRRSR  840
SRIKLNQPVN CKPCKIMETN KDESLGNKSD GLTDKKEKKL IHYTRRKYKV KIDYSTNGLR  900
RCSRKCLAEE VSGASGDDPD KHAEQTTLIY PCNIGITRSG SAAFGFSPID DSEMLHEVQV  960
LEAASGLTLN SAPSQIAGSI LTATMAVKSV AGQIEDRLLE ESNTERNICN VKASGSCEIE  1020
HEINASGGTS ERQDFCTTKC CSPFDTAANE RFEMQIEDQI MGNVNIMSET CDLVSEGQRR  1080
ILDDDDDASM HEVSDLANSA SLHVSHLPVA QMANVVVENS SINNEVSSPV TLDNEVQREI  1140
KTKSRTNGDQ CSSSDDTLMN RPSTPLDERC DHEQETCAAE NKMQQENEIT NGGHEELVLS  1200
DVISGPNIIP MDESSEFHRE PHAAVNLCNG VAFESGEQLV FLTANDSKKE LTPCSGTQME  1260
INPSTASPEF SKLNRQDSAE NNLCSGSTLG TVVPLEIPTT DISTVEEFAP NSATKNQVLA  1320
EASREICVIP DLYSCMDLEH EVEQEIQSND VVIGDSVAQK MHESSSSINE DRPVSTCVIL  1380
VNQPTPSPVK KCCDIECKSC GGESVVKCNE VCSSQEIESI ESSLVDFRSN AGKGRKRKSE  1440
VEQPTENKLN SNGFIRSPCE GLRPRAGKDA ICKSEVDDGK SAEENPVTKR SRKPSDASVP  1500
CPKRKEITKR SHKCNLEGCR MSFETKTELQ LHKRNRCTYD GCGKKFRSHK YAIVHQRVHE  1560
DDRPLKCPWK GCSMSFKWAW ARIEHIRVHT GEKPYLCKVE GCGLSFRFVS DFSRHRRKTG  1620
HYSNTPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	1e-55	270	470	137	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	1e-55	270	470	137	346	Arabidopsis JMJ13
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041029.1	0.0	PREDICTED: probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A3N7FNR9	0.0	A0A3N7FNR9_POPTR; Uncharacterized protein
STRING	POPTR_0010s23160.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8031	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]